miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8222 5' -55.4 NC_001978.2 + 526 0.78 0.124343
Target:  5'- cGCCuGGGCaucGuuGCCGCUGAAGCCCg -3'
miRNA:   3'- aCGG-CUUGaa-CuuCGGCGGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 749 0.67 0.542712
Target:  5'- -cCCGAagGCgcUGAAGCgCGCUGAGGCUg -3'
miRNA:   3'- acGGCU--UGa-ACUUCG-GCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 750 0.75 0.194739
Target:  5'- cGCCGAAggUGAAGCCGaCG-AGCCg -3'
miRNA:   3'- aCGGCUUgaACUUCGGCgGCuUCGGg -5'
8222 5' -55.4 NC_001978.2 + 1008 0.72 0.275537
Target:  5'- aGCgCGAc---GAAGCCGCCGGAGUCg -3'
miRNA:   3'- aCG-GCUugaaCUUCGGCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 1086 0.68 0.478619
Target:  5'- uUGCCGAcgccgcuuGCUggGAAGCCuuccggGUCGucGCCCc -3'
miRNA:   3'- -ACGGCU--------UGAa-CUUCGG------CGGCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 1766 0.68 0.520983
Target:  5'- cGCCGGacggcaacaggGCUUGAAcccuGCCGCUGugucGCUCg -3'
miRNA:   3'- aCGGCU-----------UGAACUU----CGGCGGCuu--CGGG- -5'
8222 5' -55.4 NC_001978.2 + 2208 0.68 0.520983
Target:  5'- cUGCCGAcgacgacccGCUUG-AGCCGggggaCGAAGUCg -3'
miRNA:   3'- -ACGGCU---------UGAACuUCGGCg----GCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 2651 0.67 0.575831
Target:  5'- gUGCCGAcccaACgccggGuuGCCGUCGuGGCUCa -3'
miRNA:   3'- -ACGGCU----UGaa---CuuCGGCGGCuUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 3047 0.68 0.510246
Target:  5'- cGCCG-----GAAGCCGCaaCGgcGCCCa -3'
miRNA:   3'- aCGGCuugaaCUUCGGCG--GCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 3336 0.66 0.643118
Target:  5'- cGCCGGAaggugUUUGAGGCguacgacauugaCGCCGAcgggaacgaAGUCCu -3'
miRNA:   3'- aCGGCUU-----GAACUUCG------------GCGGCU---------UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 4095 0.7 0.381018
Target:  5'- cGCUGAACcugggcGAAGUCggcgaagaGCCGGAGCCUg -3'
miRNA:   3'- aCGGCUUGaa----CUUCGG--------CGGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 4176 0.73 0.261549
Target:  5'- aGCCGGAC--GAAGa-GCCGGAGCCg -3'
miRNA:   3'- aCGGCUUGaaCUUCggCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 5183 0.75 0.189468
Target:  5'- gGCgGAACgcuGAG-CGCCGGAGCCCg -3'
miRNA:   3'- aCGgCUUGaacUUCgGCGGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 5511 0.77 0.131645
Target:  5'- aGCCGuACUUGAAGCCGCCcaugGAAcGCUg -3'
miRNA:   3'- aCGGCuUGAACUUCGGCGG----CUU-CGGg -5'
8222 5' -55.4 NC_001978.2 + 5723 0.67 0.553689
Target:  5'- cGUCGGAaacCUUGGAGUCGgCGucAGCCUc -3'
miRNA:   3'- aCGGCUU---GAACUUCGGCgGCu-UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 5889 0.66 0.631869
Target:  5'- uUGCCG---UUGAAGgUGuCCGggGCgCCg -3'
miRNA:   3'- -ACGGCuugAACUUCgGC-GGCuuCG-GG- -5'
8222 5' -55.4 NC_001978.2 + 6441 0.73 0.254775
Target:  5'- cUGCCGAACUcagacUGAAGCUGaaGc-GCCCg -3'
miRNA:   3'- -ACGGCUUGA-----ACUUCGGCggCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 6748 0.66 0.631869
Target:  5'- aGCCGGucACgUUGGuuGGCuucgCGCCGGAGCgCa -3'
miRNA:   3'- aCGGCU--UG-AACU--UCG----GCGGCUUCGgG- -5'
8222 5' -55.4 NC_001978.2 + 6815 0.7 0.363149
Target:  5'- cGCCGAcCUUGugucGGUC-CCGggGCUCa -3'
miRNA:   3'- aCGGCUuGAACu---UCGGcGGCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 7173 0.71 0.354435
Target:  5'- aGgCGAACUUGAGauugacguacucGaCGCCGGAGCCg -3'
miRNA:   3'- aCgGCUUGAACUU------------CgGCGGCUUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.