miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8222 5' -55.4 NC_001978.2 + 6815 0.7 0.363149
Target:  5'- cGCCGAcCUUGugucGGUC-CCGggGCUCa -3'
miRNA:   3'- aCGGCUuGAACu---UCGGcGGCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 31059 0.72 0.290116
Target:  5'- uUGCCGcuguGCUcGAAGCCGCUGccGCUg -3'
miRNA:   3'- -ACGGCu---UGAaCUUCGGCGGCuuCGGg -5'
8222 5' -55.4 NC_001978.2 + 9100 0.72 0.305293
Target:  5'- gGCUGAgGCUaagcgccugggUGAAGCCGCCGGugaaguguauucGGCCg -3'
miRNA:   3'- aCGGCU-UGA-----------ACUUCGGCGGCU------------UCGGg -5'
8222 5' -55.4 NC_001978.2 + 24982 0.72 0.305293
Target:  5'- uUGCCGAAUg-GgcGCUGaccuucgguCCGAAGCCCg -3'
miRNA:   3'- -ACGGCUUGaaCuuCGGC---------GGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 32653 0.72 0.309182
Target:  5'- gGCCGAcugacGCUgacgcccuggggGAAGCCGCCGGgcguaucuguuacaAGUCCu -3'
miRNA:   3'- aCGGCU-----UGAa-----------CUUCGGCGGCU--------------UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 34633 0.72 0.313107
Target:  5'- uUGCCGggUUc-GAGCCgacGCCGAcugAGCCCc -3'
miRNA:   3'- -ACGGCuuGAacUUCGG---CGGCU---UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 34257 0.71 0.329188
Target:  5'- cGCCGucggcGGAGCuUGCCGGAGCCa -3'
miRNA:   3'- aCGGCuugaaCUUCG-GCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 30280 0.71 0.345869
Target:  5'- cGUCcauGCUcGAAGCCGCCGAGGgCg -3'
miRNA:   3'- aCGGcu-UGAaCUUCGGCGGCUUCgGg -5'
8222 5' -55.4 NC_001978.2 + 7173 0.71 0.354435
Target:  5'- aGgCGAACUUGAGauugacguacucGaCGCCGGAGCCg -3'
miRNA:   3'- aCgGCUUGAACUU------------CgGCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 31437 0.72 0.282752
Target:  5'- aGCgUGcACgcgGAAGCCGCCGGuucgaauccGGCCCg -3'
miRNA:   3'- aCG-GCuUGaa-CUUCGGCGGCU---------UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 36092 0.72 0.275537
Target:  5'- cGCCGAcaccugggcGCgcGAGGaaGCCGAAGCCg -3'
miRNA:   3'- aCGGCU---------UGaaCUUCggCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 4176 0.73 0.261549
Target:  5'- aGCCGGAC--GAAGa-GCCGGAGCCg -3'
miRNA:   3'- aCGGCUUGaaCUUCggCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 20243 0.85 0.036088
Target:  5'- gGCCGugaagGAAGCCGCCGAAGCCg -3'
miRNA:   3'- aCGGCuugaaCUUCGGCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 32149 0.78 0.11409
Target:  5'- gGCUGAACgagGAAGCCGaCCGggGCg- -3'
miRNA:   3'- aCGGCUUGaa-CUUCGGC-GGCuuCGgg -5'
8222 5' -55.4 NC_001978.2 + 526 0.78 0.124343
Target:  5'- cGCCuGGGCaucGuuGCCGCUGAAGCCCg -3'
miRNA:   3'- aCGG-CUUGaa-CuuCGGCGGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 36775 0.77 0.147449
Target:  5'- aGCCG-ACgccGGAGCCugaGCCGGAGCCUg -3'
miRNA:   3'- aCGGCuUGaa-CUUCGG---CGGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 36653 0.75 0.174405
Target:  5'- cGCUGAGCggGAAGCC-CUGAGcGCCCc -3'
miRNA:   3'- aCGGCUUGaaCUUCGGcGGCUU-CGGG- -5'
8222 5' -55.4 NC_001978.2 + 750 0.75 0.194739
Target:  5'- cGCCGAAggUGAAGCCGaCG-AGCCg -3'
miRNA:   3'- aCGGCUUgaACUUCGGCgGCuUCGGg -5'
8222 5' -55.4 NC_001978.2 + 39370 0.74 0.217116
Target:  5'- gGUCGAGCUUGAuuGCgGaCCGAucaucgAGCCCg -3'
miRNA:   3'- aCGGCUUGAACUu-CGgC-GGCU------UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 32045 0.74 0.22911
Target:  5'- cGUCGucgGCUucgUGAAGUCGUCGGAGCCg -3'
miRNA:   3'- aCGGCu--UGA---ACUUCGGCGGCUUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.