miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8222 5' -55.4 NC_001978.2 + 5889 0.66 0.631869
Target:  5'- uUGCCG---UUGAAGgUGuCCGggGCgCCg -3'
miRNA:   3'- -ACGGCuugAACUUCgGC-GGCuuCG-GG- -5'
8222 5' -55.4 NC_001978.2 + 3047 0.68 0.510246
Target:  5'- cGCCG-----GAAGCCGCaaCGgcGCCCa -3'
miRNA:   3'- aCGGCuugaaCUUCGGCG--GCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 18351 0.68 0.499602
Target:  5'- uUGCCGcccGGCUUGcuguGGUCGCCcauGgcGCCCc -3'
miRNA:   3'- -ACGGC---UUGAACu---UCGGCGG---CuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 31450 0.85 0.039486
Target:  5'- cGCUGAGCUaccGGAGCCauggGCCGAAGCCCu -3'
miRNA:   3'- aCGGCUUGAa--CUUCGG----CGGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 24635 0.66 0.609383
Target:  5'- aUGCCGAcCaUGAcGCCGCCGAcgaacGCa- -3'
miRNA:   3'- -ACGGCUuGaACUuCGGCGGCUu----CGgg -5'
8222 5' -55.4 NC_001978.2 + 10061 0.66 0.598165
Target:  5'- gUGCuCcGACacGAAGCCGCCGAccgucGCCa -3'
miRNA:   3'- -ACG-GcUUGaaCUUCGGCGGCUu----CGGg -5'
8222 5' -55.4 NC_001978.2 + 15641 0.66 0.585862
Target:  5'- aGUCGAGCcacUGAGccucaguGCCGgUGAAGCCUu -3'
miRNA:   3'- aCGGCUUGa--ACUU-------CGGCgGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 12345 0.67 0.575831
Target:  5'- cG-CGAGCccgUUGAAGCCGuCCGcuGCCg -3'
miRNA:   3'- aCgGCUUG---AACUUCGGC-GGCuuCGGg -5'
8222 5' -55.4 NC_001978.2 + 12117 0.67 0.564732
Target:  5'- gUGCCG-----GAAGCCGCCGcgcGCCg -3'
miRNA:   3'- -ACGGCuugaaCUUCGGCGGCuu-CGGg -5'
8222 5' -55.4 NC_001978.2 + 31877 0.67 0.530722
Target:  5'- uUGaCCGAACUUGccgacgcGAGCCGCCc-AGUCg -3'
miRNA:   3'- -AC-GGCUUGAAC-------UUCGGCGGcuUCGGg -5'
8222 5' -55.4 NC_001978.2 + 749 0.67 0.542712
Target:  5'- -cCCGAagGCgcUGAAGCgCGCUGAGGCUg -3'
miRNA:   3'- acGGCU--UGa-ACUUCG-GCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 2651 0.67 0.575831
Target:  5'- gUGCCGAcccaACgccggGuuGCCGUCGuGGCUCa -3'
miRNA:   3'- -ACGGCU----UGaa---CuuCGGCGGCuUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 6748 0.66 0.631869
Target:  5'- aGCCGGucACgUUGGuuGGCuucgCGCCGGAGCgCa -3'
miRNA:   3'- aCGGCU--UG-AACU--UCG----GCGGCUUCGgG- -5'
8222 5' -55.4 NC_001978.2 + 7979 0.67 0.542712
Target:  5'- cGUacgUGAGCUUGAuugcgGGCgucaCGCCGucGCCCg -3'
miRNA:   3'- aCG---GCUUGAACU-----UCG----GCGGCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 18998 0.66 0.631869
Target:  5'- gUGCCGggUc--GAGUCacccgaaccauGCUGAAGCCCc -3'
miRNA:   3'- -ACGGCuuGaacUUCGG-----------CGGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 19373 0.67 0.575831
Target:  5'- cGCCGGggaaGCcaUGAAGCCGUCGGgcguGGUCg -3'
miRNA:   3'- aCGGCU----UGa-ACUUCGGCGGCU----UCGGg -5'
8222 5' -55.4 NC_001978.2 + 35534 0.67 0.542712
Target:  5'- gGCCGAACgccGuuGCUGCgGAcGCCa -3'
miRNA:   3'- aCGGCUUGaa-CuuCGGCGgCUuCGGg -5'
8222 5' -55.4 NC_001978.2 + 26274 0.68 0.499602
Target:  5'- gGCCGGacgcguACUUGAuccGGCCGUC--AGUCCa -3'
miRNA:   3'- aCGGCU------UGAACU---UCGGCGGcuUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 19175 0.66 0.631869
Target:  5'- cGCCGGACcaacccgUGAaggucAGUCGgCGggGgCCg -3'
miRNA:   3'- aCGGCUUGa------ACU-----UCGGCgGCuuCgGG- -5'
8222 5' -55.4 NC_001978.2 + 30935 0.66 0.598165
Target:  5'- aUGCCGAaggaguGCUUGAGaauGUcgCGCUGAGuggcGCCCa -3'
miRNA:   3'- -ACGGCU------UGAACUU---CG--GCGGCUU----CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.