miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8222 5' -55.4 NC_001978.2 + 41476 0.75 0.174405
Target:  5'- cGCCGccAACUUcGGAGCCGCCcc-GCCCc -3'
miRNA:   3'- aCGGC--UUGAA-CUUCGGCGGcuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 40341 0.69 0.447987
Target:  5'- gGCCGAcccuucccGCUgccccagGAAGcCCGCUGugcGCCCg -3'
miRNA:   3'- aCGGCU--------UGAa------CUUC-GGCGGCuu-CGGG- -5'
8222 5' -55.4 NC_001978.2 + 39935 1.11 0.000463
Target:  5'- uUGCCGAACUUGAAGCCGCCGAAGCCCc -3'
miRNA:   3'- -ACGGCUUGAACUUCGGCGGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 39777 0.7 0.399464
Target:  5'- gGgCGAAcCUUGuugcgGAGCgCGCCGAcGCCCu -3'
miRNA:   3'- aCgGCUU-GAAC-----UUCG-GCGGCUuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 39370 0.74 0.217116
Target:  5'- gGUCGAGCUUGAuuGCgGaCCGAucaucgAGCCCg -3'
miRNA:   3'- aCGGCUUGAACUu-CGgC-GGCU------UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 39102 0.66 0.631869
Target:  5'- aGCCGGGCagucAAGCCGCCauucaCCCg -3'
miRNA:   3'- aCGGCUUGaac-UUCGGCGGcuuc-GGG- -5'
8222 5' -55.4 NC_001978.2 + 38317 0.7 0.363149
Target:  5'- cGCUGAGg--GuuGCCGCCGggGCUUc -3'
miRNA:   3'- aCGGCUUgaaCuuCGGCGGCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 37535 0.67 0.542712
Target:  5'- aGUCGAGC--GggGgCGCaccuggGAAGCCCg -3'
miRNA:   3'- aCGGCUUGaaCuuCgGCGg-----CUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 37390 0.66 0.617248
Target:  5'- cGCCGAccaucgauagcgccGC-UGAGGCacugacCGCCGGAGUgCg -3'
miRNA:   3'- aCGGCU--------------UGaACUUCG------GCGGCUUCGgG- -5'
8222 5' -55.4 NC_001978.2 + 36877 0.69 0.438019
Target:  5'- gGCUGAACccggUUGAGGUCGCUGccGCUg -3'
miRNA:   3'- aCGGCUUG----AACUUCGGCGGCuuCGGg -5'
8222 5' -55.4 NC_001978.2 + 36775 0.77 0.147449
Target:  5'- aGCCG-ACgccGGAGCCugaGCCGGAGCCUg -3'
miRNA:   3'- aCGGCuUGaa-CUUCGG---CGGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 36689 0.66 0.643118
Target:  5'- cGCgGAACcUG-AGCCgguaccggcggaGCCuGAGCCCg -3'
miRNA:   3'- aCGgCUUGaACuUCGG------------CGGcUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 36653 0.75 0.174405
Target:  5'- cGCUGAGCggGAAGCC-CUGAGcGCCCc -3'
miRNA:   3'- aCGGCUUGaaCUUCGGcGGCUU-CGGG- -5'
8222 5' -55.4 NC_001978.2 + 36092 0.72 0.275537
Target:  5'- cGCCGAcaccugggcGCgcGAGGaaGCCGAAGCCg -3'
miRNA:   3'- aCGGCU---------UGaaCUUCggCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 35808 0.66 0.636369
Target:  5'- cGCCGAAgacgacggcaagguuCUUGAcgaccuGGgCGCCGAccuucccuuGCCCg -3'
miRNA:   3'- aCGGCUU---------------GAACU------UCgGCGGCUu--------CGGG- -5'
8222 5' -55.4 NC_001978.2 + 35728 0.69 0.447987
Target:  5'- cUGCCGcGCcaugcGAAGCCcuuggcaacGCCGucGCCCa -3'
miRNA:   3'- -ACGGCuUGaa---CUUCGG---------CGGCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 35561 0.69 0.428179
Target:  5'- cGCCGGAUgucGAGCCGgagaCGgcGCCCc -3'
miRNA:   3'- aCGGCUUGaacUUCGGCg---GCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 35534 0.67 0.542712
Target:  5'- gGCCGAACgccGuuGCUGCgGAcGCCa -3'
miRNA:   3'- aCGGCUUGaa-CuuCGGCGgCUuCGGg -5'
8222 5' -55.4 NC_001978.2 + 34633 0.72 0.313107
Target:  5'- uUGCCGggUUc-GAGCCgacGCCGAcugAGCCCc -3'
miRNA:   3'- -ACGGCuuGAacUUCGG---CGGCU---UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 34257 0.71 0.329188
Target:  5'- cGCCGucggcGGAGCuUGCCGGAGCCa -3'
miRNA:   3'- aCGGCuugaaCUUCG-GCGGCUUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.