miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8222 5' -55.4 NC_001978.2 + 7375 0.71 0.345869
Target:  5'- gGCCGAACcaucuGAGCCGUgaaggaCGGAGCCUc -3'
miRNA:   3'- aCGGCUUGaac--UUCGGCG------GCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 7401 0.7 0.363149
Target:  5'- gGCCGAAgUUGAGGaaGCUguGAAGCUUg -3'
miRNA:   3'- aCGGCUUgAACUUCggCGG--CUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 7877 0.7 0.381018
Target:  5'- cGCCcguGAAC-UGAA-UCGCCGGAGCCUc -3'
miRNA:   3'- aCGG---CUUGaACUUcGGCGGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 7979 0.67 0.542712
Target:  5'- cGUacgUGAGCUUGAuugcgGGCgucaCGCCGucGCCCg -3'
miRNA:   3'- aCG---GCUUGAACU-----UCG----GCGGCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 8627 0.66 0.643118
Target:  5'- aGCUGAACcUGAAGgggaaGgCGAAGCCg -3'
miRNA:   3'- aCGGCUUGaACUUCgg---CgGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 9100 0.72 0.305293
Target:  5'- gGCUGAgGCUaagcgccugggUGAAGCCGCCGGugaaguguauucGGCCg -3'
miRNA:   3'- aCGGCU-UGA-----------ACUUCGGCGGCU------------UCGGg -5'
8222 5' -55.4 NC_001978.2 + 9755 0.69 0.428179
Target:  5'- cGCCGGGucCUUGAu-CUuCCGGAGCCCg -3'
miRNA:   3'- aCGGCUU--GAACUucGGcGGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 9885 0.68 0.489058
Target:  5'- cUGCCG-ACUUcgccgcGCCGUCGAccuuGCCCa -3'
miRNA:   3'- -ACGGCuUGAAcuu---CGGCGGCUu---CGGG- -5'
8222 5' -55.4 NC_001978.2 + 10061 0.66 0.598165
Target:  5'- gUGCuCcGACacGAAGCCGCCGAccgucGCCa -3'
miRNA:   3'- -ACG-GcUUGaaCUUCGGCGGCUu----CGGg -5'
8222 5' -55.4 NC_001978.2 + 11300 0.68 0.472409
Target:  5'- cGCUGAcGCUUGAGGUauacgggcgcgaccgCGCUGAguucacggaAGCCCu -3'
miRNA:   3'- aCGGCU-UGAACUUCG---------------GCGGCU---------UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 12117 0.67 0.564732
Target:  5'- gUGCCG-----GAAGCCGCCGcgcGCCg -3'
miRNA:   3'- -ACGGCuugaaCUUCGGCGGCuu-CGGg -5'
8222 5' -55.4 NC_001978.2 + 12345 0.67 0.575831
Target:  5'- cG-CGAGCccgUUGAAGCCGuCCGcuGCCg -3'
miRNA:   3'- aCgGCUUG---AACUUCGGC-GGCuuCGGg -5'
8222 5' -55.4 NC_001978.2 + 12592 0.7 0.399464
Target:  5'- gUGCCGGAgUcguacagcgUGAAGCCGaCCGGGaacGCCg -3'
miRNA:   3'- -ACGGCUUgA---------ACUUCGGC-GGCUU---CGGg -5'
8222 5' -55.4 NC_001978.2 + 12696 0.66 0.620621
Target:  5'- cGCUGggUUgGGAGuuGUCGGgucAGCUCa -3'
miRNA:   3'- aCGGCuuGAaCUUCggCGGCU---UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 13231 0.7 0.408899
Target:  5'- gGCCGAcCUU---GCCGCCGGAacGCUCa -3'
miRNA:   3'- aCGGCUuGAAcuuCGGCGGCUU--CGGG- -5'
8222 5' -55.4 NC_001978.2 + 13443 0.69 0.447987
Target:  5'- aGUaCGAAUUgaagGuuGUCGCCGAAGCCa -3'
miRNA:   3'- aCG-GCUUGAa---CuuCGGCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 13554 0.68 0.489058
Target:  5'- aGCgGAAUa-GAAGCCGCCGucaucuucggcAAGCuCCg -3'
miRNA:   3'- aCGgCUUGaaCUUCGGCGGC-----------UUCG-GG- -5'
8222 5' -55.4 NC_001978.2 + 13920 0.69 0.458078
Target:  5'- cGCUGGGCUUGAAGgCGcCCGGAuaCa -3'
miRNA:   3'- aCGGCUUGAACUUCgGC-GGCUUcgGg -5'
8222 5' -55.4 NC_001978.2 + 14489 0.68 0.489058
Target:  5'- aGCCGAACgggauuccaUGAAGCCaaCGGAcguaaaccguGCCCa -3'
miRNA:   3'- aCGGCUUGa--------ACUUCGGcgGCUU----------CGGG- -5'
8222 5' -55.4 NC_001978.2 + 15641 0.66 0.585862
Target:  5'- aGUCGAGCcacUGAGccucaguGCCGgUGAAGCCUu -3'
miRNA:   3'- aCGGCUUGa--ACUU-------CGGCgGCUUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.