miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8222 5' -55.4 NC_001978.2 + 31059 0.72 0.290116
Target:  5'- uUGCCGcuguGCUcGAAGCCGCUGccGCUg -3'
miRNA:   3'- -ACGGCu---UGAaCUUCGGCGGCuuCGGg -5'
8222 5' -55.4 NC_001978.2 + 24982 0.72 0.305293
Target:  5'- uUGCCGAAUg-GgcGCUGaccuucgguCCGAAGCCCg -3'
miRNA:   3'- -ACGGCUUGaaCuuCGGC---------GGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 9100 0.72 0.305293
Target:  5'- gGCUGAgGCUaagcgccugggUGAAGCCGCCGGugaaguguauucGGCCg -3'
miRNA:   3'- aCGGCU-UGA-----------ACUUCGGCGGCU------------UCGGg -5'
8222 5' -55.4 NC_001978.2 + 32653 0.72 0.309182
Target:  5'- gGCCGAcugacGCUgacgcccuggggGAAGCCGCCGGgcguaucuguuacaAGUCCu -3'
miRNA:   3'- aCGGCU-----UGAa-----------CUUCGGCGGCU--------------UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 23645 0.72 0.313107
Target:  5'- gGUCugGAACUUGAAGCgGCC-AAGCuCCg -3'
miRNA:   3'- aCGG--CUUGAACUUCGgCGGcUUCG-GG- -5'
8222 5' -55.4 NC_001978.2 + 34633 0.72 0.313107
Target:  5'- uUGCCGggUUc-GAGCCgacGCCGAcugAGCCCc -3'
miRNA:   3'- -ACGGCuuGAacUUCGG---CGGCU---UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 31611 0.71 0.321072
Target:  5'- gGCCGGACggGAAGCCGgaGucAAGCgCCg -3'
miRNA:   3'- aCGGCUUGaaCUUCGGCggC--UUCG-GG- -5'
8222 5' -55.4 NC_001978.2 + 34257 0.71 0.329188
Target:  5'- cGCCGucggcGGAGCuUGCCGGAGCCa -3'
miRNA:   3'- aCGGCuugaaCUUCG-GCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 30280 0.71 0.345869
Target:  5'- cGUCcauGCUcGAAGCCGCCGAGGgCg -3'
miRNA:   3'- aCGGcu-UGAaCUUCGGCGGCUUCgGg -5'
8222 5' -55.4 NC_001978.2 + 7375 0.71 0.345869
Target:  5'- gGCCGAACcaucuGAGCCGUgaaggaCGGAGCCUc -3'
miRNA:   3'- aCGGCUUGaac--UUCGGCG------GCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 7173 0.71 0.354435
Target:  5'- aGgCGAACUUGAGauugacguacucGaCGCCGGAGCCg -3'
miRNA:   3'- aCgGCUUGAACUU------------CgGCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 7401 0.7 0.363149
Target:  5'- gGCCGAAgUUGAGGaaGCUguGAAGCUUg -3'
miRNA:   3'- aCGGCUUgAACUUCggCGG--CUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 38317 0.7 0.363149
Target:  5'- cGCUGAGg--GuuGCCGCCGggGCUUc -3'
miRNA:   3'- aCGGCUUgaaCuuCGGCGGCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 6815 0.7 0.363149
Target:  5'- cGCCGAcCUUGugucGGUC-CCGggGCUCa -3'
miRNA:   3'- aCGGCUuGAACu---UCGGcGGCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 19510 0.7 0.37201
Target:  5'- gGCCGGACguucgacacGGAGCUGaCCGgcGCCg -3'
miRNA:   3'- aCGGCUUGaa-------CUUCGGC-GGCuuCGGg -5'
8222 5' -55.4 NC_001978.2 + 7877 0.7 0.381018
Target:  5'- cGCCcguGAAC-UGAA-UCGCCGGAGCCUc -3'
miRNA:   3'- aCGG---CUUGaACUUcGGCGGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 4095 0.7 0.381018
Target:  5'- cGCUGAACcugggcGAAGUCggcgaagaGCCGGAGCCUg -3'
miRNA:   3'- aCGGCUUGaa----CUUCGG--------CGGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 24899 0.7 0.39017
Target:  5'- cGCUGAGCaagGggGgCGCCGAcGCUg -3'
miRNA:   3'- aCGGCUUGaa-CuuCgGCGGCUuCGGg -5'
8222 5' -55.4 NC_001978.2 + 12592 0.7 0.399464
Target:  5'- gUGCCGGAgUcguacagcgUGAAGCCGaCCGGGaacGCCg -3'
miRNA:   3'- -ACGGCUUgA---------ACUUCGGC-GGCUU---CGGg -5'
8222 5' -55.4 NC_001978.2 + 39777 0.7 0.399464
Target:  5'- gGgCGAAcCUUGuugcgGAGCgCGCCGAcGCCCu -3'
miRNA:   3'- aCgGCUU-GAAC-----UUCG-GCGGCUuCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.