miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8222 5' -55.4 NC_001978.2 + 30935 0.66 0.598165
Target:  5'- aUGCCGAaggaguGCUUGAGaauGUcgCGCUGAGuggcGCCCa -3'
miRNA:   3'- -ACGGCU------UGAACUU---CG--GCGGCUU----CGGG- -5'
8222 5' -55.4 NC_001978.2 + 12696 0.66 0.620621
Target:  5'- cGCUGggUUgGGAGuuGUCGGgucAGCUCa -3'
miRNA:   3'- aCGGCuuGAaCUUCggCGGCU---UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 32903 0.66 0.620621
Target:  5'- cGCCGAcACU--GAGCCGgUCGu-GCCCc -3'
miRNA:   3'- aCGGCU-UGAacUUCGGC-GGCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 39102 0.66 0.631869
Target:  5'- aGCCGGGCagucAAGCCGCCauucaCCCg -3'
miRNA:   3'- aCGGCUUGaac-UUCGGCGGcuuc-GGG- -5'
8222 5' -55.4 NC_001978.2 + 31877 0.67 0.530722
Target:  5'- uUGaCCGAACUUGccgacgcGAGCCGCCc-AGUCg -3'
miRNA:   3'- -AC-GGCUUGAAC-------UUCGGCGGcuUCGGg -5'
8222 5' -55.4 NC_001978.2 + 35534 0.67 0.542712
Target:  5'- gGCCGAACgccGuuGCUGCgGAcGCCa -3'
miRNA:   3'- aCGGCUUGaa-CuuCGGCGgCUuCGGg -5'
8222 5' -55.4 NC_001978.2 + 7979 0.67 0.542712
Target:  5'- cGUacgUGAGCUUGAuugcgGGCgucaCGCCGucGCCCg -3'
miRNA:   3'- aCG---GCUUGAACU-----UCG----GCGGCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 749 0.67 0.542712
Target:  5'- -cCCGAagGCgcUGAAGCgCGCUGAGGCUg -3'
miRNA:   3'- acGGCU--UGa-ACUUCG-GCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 19373 0.67 0.575831
Target:  5'- cGCCGGggaaGCcaUGAAGCCGUCGGgcguGGUCg -3'
miRNA:   3'- aCGGCU----UGa-ACUUCGGCGGCU----UCGGg -5'
8222 5' -55.4 NC_001978.2 + 12345 0.67 0.575831
Target:  5'- cG-CGAGCccgUUGAAGCCGuCCGcuGCCg -3'
miRNA:   3'- aCgGCUUG---AACUUCGGC-GGCuuCGGg -5'
8222 5' -55.4 NC_001978.2 + 12117 0.67 0.564732
Target:  5'- gUGCCG-----GAAGCCGCCGcgcGCCg -3'
miRNA:   3'- -ACGGCuugaaCUUCGGCGGCuu-CGGg -5'
8222 5' -55.4 NC_001978.2 + 2651 0.67 0.575831
Target:  5'- gUGCCGAcccaACgccggGuuGCCGUCGuGGCUCa -3'
miRNA:   3'- -ACGGCU----UGaa---CuuCGGCGGCuUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 25329 0.67 0.531807
Target:  5'- aGCCGAAgaUGGuaaguGGCgCGCCGGuaaCCCg -3'
miRNA:   3'- aCGGCUUgaACU-----UCG-GCGGCUuc-GGG- -5'
8222 5' -55.4 NC_001978.2 + 17862 0.67 0.531807
Target:  5'- gUGCCGGGCgaaGGGUCGCUGAcgaAGCUUc -3'
miRNA:   3'- -ACGGCUUGaacUUCGGCGGCU---UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 37535 0.67 0.542712
Target:  5'- aGUCGAGC--GggGgCGCaccuggGAAGCCCg -3'
miRNA:   3'- aCGGCUUGaaCuuCgGCGg-----CUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 32955 0.67 0.553689
Target:  5'- aGCCGuucaggGAGGauuaCGCCGAAGCgCu -3'
miRNA:   3'- aCGGCuugaa-CUUCg---GCGGCUUCGgG- -5'
8222 5' -55.4 NC_001978.2 + 5723 0.67 0.553689
Target:  5'- cGUCGGAaacCUUGGAGUCGgCGucAGCCUc -3'
miRNA:   3'- aCGGCUU---GAACUUCGGCgGCu-UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 29416 0.67 0.553689
Target:  5'- gGCCGGucCUgGggGUCGCUGuauGGCgCCg -3'
miRNA:   3'- aCGGCUu-GAaCuuCGGCGGCu--UCG-GG- -5'
8222 5' -55.4 NC_001978.2 + 20362 0.68 0.520983
Target:  5'- cGCCGGucACcccgGAAGCCgaagcggcgaagGCCGAAGUCg -3'
miRNA:   3'- aCGGCU--UGaa--CUUCGG------------CGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 2208 0.68 0.520983
Target:  5'- cUGCCGAcgacgacccGCUUG-AGCCGggggaCGAAGUCg -3'
miRNA:   3'- -ACGGCU---------UGAACuUCGGCg----GCUUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.