Results 41 - 60 of 109 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 30539 | 0.7 | 0.403222 |
Target: 5'- aGCCGccuacguGCUUGAGcgguacGUguccguuccccgugaCGCCGAAGCCCg -3' miRNA: 3'- aCGGCu------UGAACUU------CG---------------GCGGCUUCGGG- -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 13231 | 0.7 | 0.408899 |
Target: 5'- gGCCGAcCUU---GCCGCCGGAacGCUCa -3' miRNA: 3'- aCGGCUuGAAcuuCGGCGGCUU--CGGG- -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 19999 | 0.7 | 0.408899 |
Target: 5'- aGCCgGAACUUG-AGCugugCGCCGGGuGCUCg -3' miRNA: 3'- aCGG-CUUGAACuUCG----GCGGCUU-CGGG- -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 20272 | 0.7 | 0.408899 |
Target: 5'- gGCCGu-CUUGAuGuuGUCGAcguGCCCg -3' miRNA: 3'- aCGGCuuGAACUuCggCGGCUu--CGGG- -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 15935 | 0.69 | 0.418472 |
Target: 5'- aGCCGGACgcaccgcgUUGGuacacGUCGCCGGAGUCg -3' miRNA: 3'- aCGGCUUG--------AACUu----CGGCGGCUUCGGg -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 35561 | 0.69 | 0.428179 |
Target: 5'- cGCCGGAUgucGAGCCGgagaCGgcGCCCc -3' miRNA: 3'- aCGGCUUGaacUUCGGCg---GCuuCGGG- -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 9755 | 0.69 | 0.428179 |
Target: 5'- cGCCGGGucCUUGAu-CUuCCGGAGCCCg -3' miRNA: 3'- aCGGCUU--GAACUucGGcGGCUUCGGG- -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 17629 | 0.69 | 0.438019 |
Target: 5'- aGCCc-GCU--GAGCCGuCCGGAGCCg -3' miRNA: 3'- aCGGcuUGAacUUCGGC-GGCUUCGGg -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 36877 | 0.69 | 0.438019 |
Target: 5'- gGCUGAACccggUUGAGGUCGCUGccGCUg -3' miRNA: 3'- aCGGCUUG----AACUUCGGCGGCuuCGGg -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 20812 | 0.69 | 0.446984 |
Target: 5'- cGUCGAACgcgcGGAGCCagucaacaaggacGuCCGAAGCCUu -3' miRNA: 3'- aCGGCUUGaa--CUUCGG-------------C-GGCUUCGGG- -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 13443 | 0.69 | 0.447987 |
Target: 5'- aGUaCGAAUUgaagGuuGUCGCCGAAGCCa -3' miRNA: 3'- aCG-GCUUGAa---CuuCGGCGGCUUCGGg -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 23683 | 0.69 | 0.447987 |
Target: 5'- cGCCaaucucgaacuuGAGCUugUGGAGUacaCGCCGAagcguGGCCCg -3' miRNA: 3'- aCGG------------CUUGA--ACUUCG---GCGGCU-----UCGGG- -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 40341 | 0.69 | 0.447987 |
Target: 5'- gGCCGAcccuucccGCUgccccagGAAGcCCGCUGugcGCCCg -3' miRNA: 3'- aCGGCU--------UGAa------CUUC-GGCGGCuu-CGGG- -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 35728 | 0.69 | 0.447987 |
Target: 5'- cUGCCGcGCcaugcGAAGCCcuuggcaacGCCGucGCCCa -3' miRNA: 3'- -ACGGCuUGaa---CUUCGG---------CGGCuuCGGG- -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 13920 | 0.69 | 0.458078 |
Target: 5'- cGCUGGGCUUGAAGgCGcCCGGAuaCa -3' miRNA: 3'- aCGGCUUGAACUUCgGC-GGCUUcgGg -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 21059 | 0.68 | 0.468291 |
Target: 5'- gUGCCGGAagagauccuuacCgaGAAGCUugaGCCGAAGgCCg -3' miRNA: 3'- -ACGGCUU------------GaaCUUCGG---CGGCUUCgGG- -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 11300 | 0.68 | 0.472409 |
Target: 5'- cGCUGAcGCUUGAGGUauacgggcgcgaccgCGCUGAguucacggaAGCCCu -3' miRNA: 3'- aCGGCU-UGAACUUCG---------------GCGGCU---------UCGGG- -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 22582 | 0.68 | 0.478619 |
Target: 5'- aGCCGGucGCacgGAAGgCGUCGggGCgCa -3' miRNA: 3'- aCGGCU--UGaa-CUUCgGCGGCuuCGgG- -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 1086 | 0.68 | 0.478619 |
Target: 5'- uUGCCGAcgccgcuuGCUggGAAGCCuuccggGUCGucGCCCc -3' miRNA: 3'- -ACGGCU--------UGAa-CUUCGG------CGGCuuCGGG- -5' |
|||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 16753 | 0.68 | 0.488009 |
Target: 5'- cGCCGAcauGCgUUGAccgcauagcggcaAGCgCGCCGGuuuccuGCCCa -3' miRNA: 3'- aCGGCU---UG-AACU-------------UCG-GCGGCUu-----CGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home