miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 3' -54.5 NC_001978.2 + 40015 0.66 0.697058
Target:  5'- ---gGCCCuaaGUCGugguGGggGCGCGCgUCa -3'
miRNA:   3'- cuugCGGG---UAGC----UCuuCGCGCGaAGc -5'
8224 3' -54.5 NC_001978.2 + 17332 0.66 0.685908
Target:  5'- -cACGCCCGUCGcacacGAAGcCGUGCg-CGg -3'
miRNA:   3'- cuUGCGGGUAGCu----CUUC-GCGCGaaGC- -5'
8224 3' -54.5 NC_001978.2 + 37815 0.66 0.685908
Target:  5'- gGGGuCGCCguCGUCGGGcAGCGCGCa--- -3'
miRNA:   3'- -CUU-GCGG--GUAGCUCuUCGCGCGaagc -5'
8224 3' -54.5 NC_001978.2 + 1038 0.66 0.685908
Target:  5'- aGACuCCCGcCGAGAAGCGCGac-CGc -3'
miRNA:   3'- cUUGcGGGUaGCUCUUCGCGCgaaGC- -5'
8224 3' -54.5 NC_001978.2 + 32321 0.66 0.685908
Target:  5'- aGGCGCCacgcaagacggCGUCacAGAAGCGCGCUgaagCGu -3'
miRNA:   3'- cUUGCGG-----------GUAGc-UCUUCGCGCGAa---GC- -5'
8224 3' -54.5 NC_001978.2 + 25440 0.66 0.663456
Target:  5'- --uCGCCCAggcuGAGGCGCugggGCUUCGc -3'
miRNA:   3'- cuuGCGGGUagcuCUUCGCG----CGAAGC- -5'
8224 3' -54.5 NC_001978.2 + 28578 0.66 0.652178
Target:  5'- --cCGUCCuUCGAgcGAAGCGCGCgggCa -3'
miRNA:   3'- cuuGCGGGuAGCU--CUUCGCGCGaa-Gc -5'
8224 3' -54.5 NC_001978.2 + 2635 0.66 0.640881
Target:  5'- aGACGCCC---GGGgcGCGCGCaUCa -3'
miRNA:   3'- cUUGCGGGuagCUCuuCGCGCGaAGc -5'
8224 3' -54.5 NC_001978.2 + 18968 0.66 0.640881
Target:  5'- aAGC-CCCGgucaCGaAGAGcGCGCGCUUCGu -3'
miRNA:   3'- cUUGcGGGUa---GC-UCUU-CGCGCGAAGC- -5'
8224 3' -54.5 NC_001978.2 + 24288 0.67 0.629575
Target:  5'- -cACGCCC--CGGGcgGAGCaauGCGCUUCGu -3'
miRNA:   3'- cuUGCGGGuaGCUC--UUCG---CGCGAAGC- -5'
8224 3' -54.5 NC_001978.2 + 4905 0.67 0.595713
Target:  5'- uGAGCGCCaacuuuGAGGCGCGCgagCGu -3'
miRNA:   3'- -CUUGCGGguagcuCUUCGCGCGaa-GC- -5'
8224 3' -54.5 NC_001978.2 + 36349 0.67 0.584478
Target:  5'- cGACGCCCuUCGuc-AGCGCGCacagCGa -3'
miRNA:   3'- cUUGCGGGuAGCucuUCGCGCGaa--GC- -5'
8224 3' -54.5 NC_001978.2 + 32435 0.68 0.577756
Target:  5'- -uGCGCCCuuccaugcGUCGAGccGuucggcggacgcuucAGCGCGCUUCu -3'
miRNA:   3'- cuUGCGGG--------UAGCUC--U---------------UCGCGCGAAGc -5'
8224 3' -54.5 NC_001978.2 + 25039 0.68 0.573284
Target:  5'- cAGCGCCCAuUCGGcAAGCGU-CUUCGc -3'
miRNA:   3'- cUUGCGGGU-AGCUcUUCGCGcGAAGC- -5'
8224 3' -54.5 NC_001978.2 + 21146 0.68 0.562142
Target:  5'- -cGCGCCCAggUCGAcaAGGCcgguaaGCGCUUCGc -3'
miRNA:   3'- cuUGCGGGU--AGCUc-UUCG------CGCGAAGC- -5'
8224 3' -54.5 NC_001978.2 + 38754 0.68 0.540044
Target:  5'- -cGCGUCCAUgaccuucaggcgCGAGAAGCGCGacacgUCa -3'
miRNA:   3'- cuUGCGGGUA------------GCUCUUCGCGCga---AGc -5'
8224 3' -54.5 NC_001978.2 + 34176 0.69 0.507479
Target:  5'- uGAGCG-CCGUCGAGu-GCGCGCc--- -3'
miRNA:   3'- -CUUGCgGGUAGCUCuuCGCGCGaagc -5'
8224 3' -54.5 NC_001978.2 + 4349 0.69 0.496808
Target:  5'- -uGCGCCCGUCauccGAcGCGCGCUcuUCa -3'
miRNA:   3'- cuUGCGGGUAGcu--CUuCGCGCGA--AGc -5'
8224 3' -54.5 NC_001978.2 + 14633 0.69 0.475777
Target:  5'- aGAGCGCcaCCGUC-AGggGCagcgacguucucGCGCUUCGu -3'
miRNA:   3'- -CUUGCG--GGUAGcUCuuCG------------CGCGAAGC- -5'
8224 3' -54.5 NC_001978.2 + 32300 0.69 0.475777
Target:  5'- uGAGCGCUUcgCGAauGGCGCGCUg-- -3'
miRNA:   3'- -CUUGCGGGuaGCUcuUCGCGCGAagc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.