miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 1470 0.67 0.476817
Target:  5'- --aGGAGCCggaacgGCUGACCGGCGaACGAa- -3'
miRNA:   3'- ccgCUUCGG------CGGCUGGCUGC-UGCUgc -5'
8224 5' -58.6 NC_001978.2 + 34318 0.66 0.506973
Target:  5'- cGGC-AAGCucCGCCGA-CGGCGcAUGACGu -3'
miRNA:   3'- -CCGcUUCG--GCGGCUgGCUGC-UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 10051 0.76 0.128579
Target:  5'- -aCGAAGCCGCCGACCGuCGccauaguCGACc -3'
miRNA:   3'- ccGCUUCGGCGGCUGGCuGCu------GCUGc -5'
8224 5' -58.6 NC_001978.2 + 15699 0.72 0.242368
Target:  5'- aGCGAAGCCGCCGgaACCGuCGAgcCGuuGa -3'
miRNA:   3'- cCGCUUCGGCGGC--UGGCuGCU--GCugC- -5'
8224 5' -58.6 NC_001978.2 + 17473 0.68 0.416596
Target:  5'- cGUGuuGCCGCCGACCGuguacgcauagucaGCGuCGuACGc -3'
miRNA:   3'- cCGCuuCGGCGGCUGGC--------------UGCuGC-UGC- -5'
8224 5' -58.6 NC_001978.2 + 31336 0.66 0.517205
Target:  5'- cGGCGuuGGCCGUgaCGAacUCGACGuuGGCGc -3'
miRNA:   3'- -CCGCu-UCGGCG--GCU--GGCUGCugCUGC- -5'
8224 5' -58.6 NC_001978.2 + 30020 0.71 0.248579
Target:  5'- cGGCaAGGUCGUCGGCgGACugGGCGGCGc -3'
miRNA:   3'- -CCGcUUCGGCGGCUGgCUG--CUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 28804 0.66 0.52752
Target:  5'- cGGCGAAuCauCCaauCCGACGACGGCa -3'
miRNA:   3'- -CCGCUUcGgcGGcu-GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 26600 0.66 0.537911
Target:  5'- gGGCGuucgGGUCGUacuCGAUCGGCaGCGACa -3'
miRNA:   3'- -CCGCu---UCGGCG---GCUGGCUGcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 33825 0.68 0.410195
Target:  5'- cGCGGaacgccuucacGGUCGagCGAcCCGACGACGGCa -3'
miRNA:   3'- cCGCU-----------UCGGCg-GCU-GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 12575 0.76 0.115245
Target:  5'- cGUGAAGCCGaCCGggaacGCCGACGA-GACGg -3'
miRNA:   3'- cCGCUUCGGC-GGC-----UGGCUGCUgCUGC- -5'
8224 5' -58.6 NC_001978.2 + 29275 0.67 0.465983
Target:  5'- aGGaCGucacgcGCUGCCGACUGAcacugauaguucaCGACGGCa -3'
miRNA:   3'- -CC-GCuu----CGGCGGCUGGCU-------------GCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 9081 0.69 0.349673
Target:  5'- aGCGAuaccGgCGCCaauGCCGACGGCGAUa -3'
miRNA:   3'- cCGCUu---CgGCGGc--UGGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 3381 0.72 0.230333
Target:  5'- cGGCGAAGaCCGUCGACC-AUGACcAUGu -3'
miRNA:   3'- -CCGCUUC-GGCGGCUGGcUGCUGcUGC- -5'
8224 5' -58.6 NC_001978.2 + 38148 0.73 0.202444
Target:  5'- gGGCGAGccagucauacGCCGCCGACCG-CGAaCGcCa -3'
miRNA:   3'- -CCGCUU----------CGGCGGCUGGCuGCU-GCuGc -5'
8224 5' -58.6 NC_001978.2 + 22356 0.66 0.486773
Target:  5'- aGGUGAGGCUuCCcgGACCGGucCGGCGuCGg -3'
miRNA:   3'- -CCGCUUCGGcGG--CUGGCU--GCUGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 25919 0.66 0.506973
Target:  5'- cGUGAAGCCGacuCCGGCCGuguCGuugucaccacacACGAUGa -3'
miRNA:   3'- cCGCUUCGGC---GGCUGGCu--GC------------UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 33915 0.72 0.230333
Target:  5'- uGGCGGAGCaucgggggaGgCGACCGGCGAagagaucaCGGCGc -3'
miRNA:   3'- -CCGCUUCGg--------CgGCUGGCUGCU--------GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 20242 0.69 0.324977
Target:  5'- aGGCcgugaagGAAGCCGCCGaaGCCGcUGAgGGCa -3'
miRNA:   3'- -CCG-------CUUCGGCGGC--UGGCuGCUgCUGc -5'
8224 5' -58.6 NC_001978.2 + 41408 0.7 0.318054
Target:  5'- gGGCGggGCgGCU--CCGAaguUGGCGGCGu -3'
miRNA:   3'- -CCGCuuCGgCGGcuGGCU---GCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.