Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8225 | 3' | -56.8 | NC_001978.2 | + | 31236 | 0.66 | 0.560171 |
Target: 5'- gCCAcacCGUCACCacUCAGcGCGuCGGCGCc -3' miRNA: 3'- -GGU---GCGGUGGauAGUC-CGU-GUCGCGu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 2000 | 0.66 | 0.560171 |
Target: 5'- aCC-CGCuCACCUugCucGCACAGUGCGg -3' miRNA: 3'- -GGuGCG-GUGGAuaGucCGUGUCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 39233 | 0.66 | 0.560171 |
Target: 5'- gUCuCGCC-CCggGUC-GGCACGGCGUc -3' miRNA: 3'- -GGuGCGGuGGa-UAGuCCGUGUCGCGu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 37815 | 0.66 | 0.549225 |
Target: 5'- -gGgGUCGCCgucGUCGGGCAgcGCGCAa -3' miRNA: 3'- ggUgCGGUGGa--UAGUCCGUguCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 37508 | 0.66 | 0.516819 |
Target: 5'- -aGCGUCGUCUGUCuucgucggcguAGGCGgAGCGCAc -3' miRNA: 3'- ggUGCGGUGGAUAG-----------UCCGUgUCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 24566 | 0.66 | 0.516819 |
Target: 5'- aCGCGCC-CCggGUUAuGGCGuugcuCAGCGCGu -3' miRNA: 3'- gGUGCGGuGGa-UAGU-CCGU-----GUCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 41214 | 0.66 | 0.505127 |
Target: 5'- gCACGCCGCUUcgCAuGGCucuucacACuGCGCu -3' miRNA: 3'- gGUGCGGUGGAuaGU-CCG-------UGuCGCGu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 19406 | 0.67 | 0.485207 |
Target: 5'- uCCuuGCCGCUg---AGGCGgAGCGCGa -3' miRNA: 3'- -GGugCGGUGGauagUCCGUgUCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 33137 | 0.67 | 0.485207 |
Target: 5'- aCCAUGUCgACCggcgcggcGUUGGGCAgUAGCGCAc -3' miRNA: 3'- -GGUGCGG-UGGa-------UAGUCCGU-GUCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 2601 | 0.67 | 0.484169 |
Target: 5'- aCGCGUCguacacgGCCUGaguggCAGGCACcuGCGCGc -3' miRNA: 3'- gGUGCGG-------UGGAUa----GUCCGUGu-CGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 23979 | 0.67 | 0.474874 |
Target: 5'- gCACGCuCAC---UCA-GCACAGCGCGa -3' miRNA: 3'- gGUGCG-GUGgauAGUcCGUGUCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 25410 | 0.67 | 0.461609 |
Target: 5'- aCUACGCCGCCgaccgguUCGGGCucgacgucgcccagGCugaGGCGCu -3' miRNA: 3'- -GGUGCGGUGGau-----AGUCCG--------------UG---UCGCGu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 24232 | 0.67 | 0.454547 |
Target: 5'- aCACGCaCGCCUGUU--GCGCAGCa-- -3' miRNA: 3'- gGUGCG-GUGGAUAGucCGUGUCGcgu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 33829 | 0.67 | 0.444561 |
Target: 5'- -gACGUCGCucgaCUGUCGGGCcgACGGCGUu -3' miRNA: 3'- ggUGCGGUG----GAUAGUCCG--UGUCGCGu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 14150 | 0.68 | 0.415364 |
Target: 5'- cCCGCcggucgagugGUCGgCUAUCGGGCGCGGCa-- -3' miRNA: 3'- -GGUG----------CGGUgGAUAGUCCGUGUCGcgu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 33954 | 0.68 | 0.404019 |
Target: 5'- aCACGUCGCCguaagggucgucGUCGGcGUACAcGCGCAc -3' miRNA: 3'- gGUGCGGUGGa-----------UAGUC-CGUGU-CGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 38219 | 0.68 | 0.396565 |
Target: 5'- gCCGCGCCacGCCU-UCGGGaCGuCAGCGg- -3' miRNA: 3'- -GGUGCGG--UGGAuAGUCC-GU-GUCGCgu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 22051 | 0.69 | 0.387373 |
Target: 5'- uUCGCGCCgACCU---GGGCAgcgaAGCGCAc -3' miRNA: 3'- -GGUGCGG-UGGAuagUCCGUg---UCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 32191 | 0.69 | 0.352035 |
Target: 5'- aCGCGCgCACCgcUgAGGgAUGGCGCAc -3' miRNA: 3'- gGUGCG-GUGGauAgUCCgUGUCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 8611 | 0.69 | 0.352035 |
Target: 5'- aUACGCCAUggcgCgaagcAUCgGGGCACGGCGCGa -3' miRNA: 3'- gGUGCGGUG----Ga----UAG-UCCGUGUCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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