miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8225 3' -56.8 NC_001978.2 + 31236 0.66 0.560171
Target:  5'- gCCAcacCGUCACCacUCAGcGCGuCGGCGCc -3'
miRNA:   3'- -GGU---GCGGUGGauAGUC-CGU-GUCGCGu -5'
8225 3' -56.8 NC_001978.2 + 2000 0.66 0.560171
Target:  5'- aCC-CGCuCACCUugCucGCACAGUGCGg -3'
miRNA:   3'- -GGuGCG-GUGGAuaGucCGUGUCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 39233 0.66 0.560171
Target:  5'- gUCuCGCC-CCggGUC-GGCACGGCGUc -3'
miRNA:   3'- -GGuGCGGuGGa-UAGuCCGUGUCGCGu -5'
8225 3' -56.8 NC_001978.2 + 37815 0.66 0.549225
Target:  5'- -gGgGUCGCCgucGUCGGGCAgcGCGCAa -3'
miRNA:   3'- ggUgCGGUGGa--UAGUCCGUguCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 37508 0.66 0.516819
Target:  5'- -aGCGUCGUCUGUCuucgucggcguAGGCGgAGCGCAc -3'
miRNA:   3'- ggUGCGGUGGAUAG-----------UCCGUgUCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 24566 0.66 0.516819
Target:  5'- aCGCGCC-CCggGUUAuGGCGuugcuCAGCGCGu -3'
miRNA:   3'- gGUGCGGuGGa-UAGU-CCGU-----GUCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 41214 0.66 0.505127
Target:  5'- gCACGCCGCUUcgCAuGGCucuucacACuGCGCu -3'
miRNA:   3'- gGUGCGGUGGAuaGU-CCG-------UGuCGCGu -5'
8225 3' -56.8 NC_001978.2 + 19406 0.67 0.485207
Target:  5'- uCCuuGCCGCUg---AGGCGgAGCGCGa -3'
miRNA:   3'- -GGugCGGUGGauagUCCGUgUCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 33137 0.67 0.485207
Target:  5'- aCCAUGUCgACCggcgcggcGUUGGGCAgUAGCGCAc -3'
miRNA:   3'- -GGUGCGG-UGGa-------UAGUCCGU-GUCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 2601 0.67 0.484169
Target:  5'- aCGCGUCguacacgGCCUGaguggCAGGCACcuGCGCGc -3'
miRNA:   3'- gGUGCGG-------UGGAUa----GUCCGUGu-CGCGU- -5'
8225 3' -56.8 NC_001978.2 + 23979 0.67 0.474874
Target:  5'- gCACGCuCAC---UCA-GCACAGCGCGa -3'
miRNA:   3'- gGUGCG-GUGgauAGUcCGUGUCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 25410 0.67 0.461609
Target:  5'- aCUACGCCGCCgaccgguUCGGGCucgacgucgcccagGCugaGGCGCu -3'
miRNA:   3'- -GGUGCGGUGGau-----AGUCCG--------------UG---UCGCGu -5'
8225 3' -56.8 NC_001978.2 + 24232 0.67 0.454547
Target:  5'- aCACGCaCGCCUGUU--GCGCAGCa-- -3'
miRNA:   3'- gGUGCG-GUGGAUAGucCGUGUCGcgu -5'
8225 3' -56.8 NC_001978.2 + 33829 0.67 0.444561
Target:  5'- -gACGUCGCucgaCUGUCGGGCcgACGGCGUu -3'
miRNA:   3'- ggUGCGGUG----GAUAGUCCG--UGUCGCGu -5'
8225 3' -56.8 NC_001978.2 + 14150 0.68 0.415364
Target:  5'- cCCGCcggucgagugGUCGgCUAUCGGGCGCGGCa-- -3'
miRNA:   3'- -GGUG----------CGGUgGAUAGUCCGUGUCGcgu -5'
8225 3' -56.8 NC_001978.2 + 33954 0.68 0.404019
Target:  5'- aCACGUCGCCguaagggucgucGUCGGcGUACAcGCGCAc -3'
miRNA:   3'- gGUGCGGUGGa-----------UAGUC-CGUGU-CGCGU- -5'
8225 3' -56.8 NC_001978.2 + 38219 0.68 0.396565
Target:  5'- gCCGCGCCacGCCU-UCGGGaCGuCAGCGg- -3'
miRNA:   3'- -GGUGCGG--UGGAuAGUCC-GU-GUCGCgu -5'
8225 3' -56.8 NC_001978.2 + 22051 0.69 0.387373
Target:  5'- uUCGCGCCgACCU---GGGCAgcgaAGCGCAc -3'
miRNA:   3'- -GGUGCGG-UGGAuagUCCGUg---UCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 32191 0.69 0.352035
Target:  5'- aCGCGCgCACCgcUgAGGgAUGGCGCAc -3'
miRNA:   3'- gGUGCG-GUGGauAgUCCgUGUCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 8611 0.69 0.352035
Target:  5'- aUACGCCAUggcgCgaagcAUCgGGGCACGGCGCGa -3'
miRNA:   3'- gGUGCGGUG----Ga----UAG-UCCGUGUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.