miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8481 5' -54 NC_002169.1 + 43316 0.66 0.961458
Target:  5'- cGUCGUUGAccaucGACACGguGCUCUUGAa-- -3'
miRNA:   3'- aCGGCAGCU-----CUGUGC--UGAGAACUggg -5'
8481 5' -54 NC_002169.1 + 114103 0.66 0.959301
Target:  5'- aGCUGUCGAcGAgGCGACUCaauucgauaaaacGAgCCg -3'
miRNA:   3'- aCGGCAGCU-CUgUGCUGAGaa-----------CUgGG- -5'
8481 5' -54 NC_002169.1 + 96508 0.66 0.957819
Target:  5'- aGCUGUUGAagaagacccgcGACGCG-CUCUUG-CCg -3'
miRNA:   3'- aCGGCAGCU-----------CUGUGCuGAGAACuGGg -5'
8481 5' -54 NC_002169.1 + 100953 0.66 0.957819
Target:  5'- -uUCGUCGuAGACA-GACUUguaguuccuUUGGCCCa -3'
miRNA:   3'- acGGCAGC-UCUGUgCUGAG---------AACUGGG- -5'
8481 5' -54 NC_002169.1 + 92780 0.66 0.956683
Target:  5'- aUGUCcUCGAGcgucuugagaccgcACGCGACgcugUGGCCCa -3'
miRNA:   3'- -ACGGcAGCUC--------------UGUGCUGaga-ACUGGG- -5'
8481 5' -54 NC_002169.1 + 128801 0.66 0.953952
Target:  5'- gUGCCGUCGAGcCAUG-Cg--UGACgCu -3'
miRNA:   3'- -ACGGCAGCUCuGUGCuGagaACUGgG- -5'
8481 5' -54 NC_002169.1 + 132954 0.66 0.953952
Target:  5'- aUGCCGUCuuGAagaGAUUCUUGACa- -3'
miRNA:   3'- -ACGGCAGcuCUgugCUGAGAACUGgg -5'
8481 5' -54 NC_002169.1 + 90814 0.66 0.949852
Target:  5'- cUGuuGUCGAGGCAUuuuugaGcACUCUUGaAUCUa -3'
miRNA:   3'- -ACggCAGCUCUGUG------C-UGAGAAC-UGGG- -5'
8481 5' -54 NC_002169.1 + 36933 0.66 0.945516
Target:  5'- aGCCGaCGGGGCuuuCGGCgag-GAUCCa -3'
miRNA:   3'- aCGGCaGCUCUGu--GCUGagaaCUGGG- -5'
8481 5' -54 NC_002169.1 + 28845 0.66 0.945516
Target:  5'- uUGCaacaGUCGA-ACGCGACUU-UGGCCa -3'
miRNA:   3'- -ACGg---CAGCUcUGUGCUGAGaACUGGg -5'
8481 5' -54 NC_002169.1 + 54109 0.67 0.940942
Target:  5'- gUGCCGUCccgcuGGCcaagaGACUUUUGGCCa -3'
miRNA:   3'- -ACGGCAGcu---CUGug---CUGAGAACUGGg -5'
8481 5' -54 NC_002169.1 + 85629 0.67 0.931067
Target:  5'- cGCCGU-GAGAaauuggaaaacgUACGACU--UGGCCCc -3'
miRNA:   3'- aCGGCAgCUCU------------GUGCUGAgaACUGGG- -5'
8481 5' -54 NC_002169.1 + 34520 0.67 0.925765
Target:  5'- cGCCGUCGccGAUAUuGACUCUaaUGACg- -3'
miRNA:   3'- aCGGCAGCu-CUGUG-CUGAGA--ACUGgg -5'
8481 5' -54 NC_002169.1 + 115305 0.67 0.925765
Target:  5'- cGCUGUCGAGAgCAgGACacaccGAUCCg -3'
miRNA:   3'- aCGGCAGCUCU-GUgCUGagaa-CUGGG- -5'
8481 5' -54 NC_002169.1 + 45636 0.68 0.908396
Target:  5'- aGCgG-CGAGACGCGugUCga-GCUCg -3'
miRNA:   3'- aCGgCaGCUCUGUGCugAGaacUGGG- -5'
8481 5' -54 NC_002169.1 + 34852 0.68 0.90778
Target:  5'- aGgCGUCGAG-CGCGgggauguggccguACUCgacGACCCa -3'
miRNA:   3'- aCgGCAGCUCuGUGC-------------UGAGaa-CUGGG- -5'
8481 5' -54 NC_002169.1 + 35987 0.68 0.902124
Target:  5'- cUGCCGUCG-GGCAU--CUCUUcGuCCCa -3'
miRNA:   3'- -ACGGCAGCuCUGUGcuGAGAA-CuGGG- -5'
8481 5' -54 NC_002169.1 + 51920 0.68 0.888869
Target:  5'- cGCUGaUUGAGACGCGAag--UGGCCa -3'
miRNA:   3'- aCGGC-AGCUCUGUGCUgagaACUGGg -5'
8481 5' -54 NC_002169.1 + 42945 0.7 0.791581
Target:  5'- aGCgUGUCGAGcgcuaGCACGGCUUgcggcaggaUGGCCCg -3'
miRNA:   3'- aCG-GCAGCUC-----UGUGCUGAGa--------ACUGGG- -5'
8481 5' -54 NC_002169.1 + 26725 0.7 0.791581
Target:  5'- cUGUCGUCGAGuauGCACGACacgUUU-ACCCa -3'
miRNA:   3'- -ACGGCAGCUC---UGUGCUGa--GAAcUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.