miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8483 3' -51 NC_002169.1 + 6943 1.09 0.009406
Target:  5'- gCAUCGAUGUCGACAUCGGCAUCGACGu -3'
miRNA:   3'- -GUAGCUACAGCUGUAGCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 6907 0.88 0.187858
Target:  5'- gCAUCGAcGUCGGCAggGGCAUCGACGu -3'
miRNA:   3'- -GUAGCUaCAGCUGUagCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 124387 0.81 0.414449
Target:  5'- gCGUCGAuggugaguaUGUCGucuuCGUCGGCAUCGACu -3'
miRNA:   3'- -GUAGCU---------ACAGCu---GUAGCCGUAGCUGc -5'
8483 3' -51 NC_002169.1 + 120407 0.8 0.480015
Target:  5'- aAUCGAUGUUGAUGUUGGCGcUGACGa -3'
miRNA:   3'- gUAGCUACAGCUGUAGCCGUaGCUGC- -5'
8483 3' -51 NC_002169.1 + 15262 0.8 0.489797
Target:  5'- -cUUGAUGUCGACGagGGgAUCGACGa -3'
miRNA:   3'- guAGCUACAGCUGUagCCgUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 107329 0.78 0.570933
Target:  5'- aGUCcGUGUaCGACAacggCGGCAUCGACGa -3'
miRNA:   3'- gUAGcUACA-GCUGUa---GCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 74994 0.78 0.581348
Target:  5'- aCAUCGGcuggaccGUCGACAUCGGCuggaccGUCGACa -3'
miRNA:   3'- -GUAGCUa------CAGCUGUAGCCG------UAGCUGc -5'
8483 3' -51 NC_002169.1 + 6782 0.77 0.623319
Target:  5'- aCGUCGAUGcCGAUGUCGaCAUCGAUGc -3'
miRNA:   3'- -GUAGCUACaGCUGUAGCcGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 44712 0.76 0.665398
Target:  5'- uGUUGAUGUUGACuauacuGUCGGCggCGGCGa -3'
miRNA:   3'- gUAGCUACAGCUG------UAGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 75189 0.74 0.776878
Target:  5'- --cCGAUGUCGAUGgucCGGCcgauGUCGACGg -3'
miRNA:   3'- guaGCUACAGCUGUa--GCCG----UAGCUGC- -5'
8483 3' -51 NC_002169.1 + 133662 0.74 0.786389
Target:  5'- aCAUCGAcccaUCGGCGUCGGCAUacaggguuuggcCGACGc -3'
miRNA:   3'- -GUAGCUac--AGCUGUAGCCGUA------------GCUGC- -5'
8483 3' -51 NC_002169.1 + 22096 0.73 0.814004
Target:  5'- aAUCGAUaaacacccGUCuGACGUCGGCGUCGuGCa -3'
miRNA:   3'- gUAGCUA--------CAG-CUGUAGCCGUAGC-UGc -5'
8483 3' -51 NC_002169.1 + 128819 0.72 0.848338
Target:  5'- uCGUCGaAUGUCGACAaCGGCAaaGAUa -3'
miRNA:   3'- -GUAGC-UACAGCUGUaGCCGUagCUGc -5'
8483 3' -51 NC_002169.1 + 77456 0.72 0.856422
Target:  5'- aGUCGAcgccGUgGACGcuacacgguUCGGCGUCGACGc -3'
miRNA:   3'- gUAGCUa---CAgCUGU---------AGCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 71812 0.72 0.856422
Target:  5'- -uUCGAUGgCGugAUCGGUcaCGACGg -3'
miRNA:   3'- guAGCUACaGCugUAGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 133819 0.72 0.871939
Target:  5'- --cCGGUuUCGACGUUGGUcUCGACGa -3'
miRNA:   3'- guaGCUAcAGCUGUAGCCGuAGCUGC- -5'
8483 3' -51 NC_002169.1 + 124922 0.72 0.879358
Target:  5'- -cUCGGUGggggCGGCggCGGCggCGGCGg -3'
miRNA:   3'- guAGCUACa---GCUGuaGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 75048 0.71 0.886546
Target:  5'- aCAUCGGccgGaccaUCGACAUCGGCcggaccAUCGACa -3'
miRNA:   3'- -GUAGCUa--C----AGCUGUAGCCG------UAGCUGc -5'
8483 3' -51 NC_002169.1 + 60105 0.71 0.893494
Target:  5'- aCGUCG--GUCGAaAUUGGUGUCGACGa -3'
miRNA:   3'- -GUAGCuaCAGCUgUAGCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 57757 0.71 0.906662
Target:  5'- -uUCGAcguaaaUGUCGugcACGUCGGCGUCgGACa -3'
miRNA:   3'- guAGCU------ACAGC---UGUAGCCGUAG-CUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.