miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8483 3' -51 NC_002169.1 + 631 0.69 0.961199
Target:  5'- uGUUGGUGcCGACGUacacgGGC-UCGACGa -3'
miRNA:   3'- gUAGCUACaGCUGUAg----CCGuAGCUGC- -5'
8483 3' -51 NC_002169.1 + 1329 0.7 0.93
Target:  5'- --aCGAUGaCGGCggCGGCggCGGCGg -3'
miRNA:   3'- guaGCUACaGCUGuaGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 1536 0.67 0.981132
Target:  5'- cUAUUGAcGUUGACAUUGGUGgcgguggCGGCGg -3'
miRNA:   3'- -GUAGCUaCAGCUGUAGCCGUa------GCUGC- -5'
8483 3' -51 NC_002169.1 + 1675 0.7 0.940152
Target:  5'- -uUCGA---CGACGUCGGUggCGACGg -3'
miRNA:   3'- guAGCUacaGCUGUAGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 2114 0.7 0.918835
Target:  5'- aCGUCGAUGacaaCGACAccaUCGGCggCGAUa -3'
miRNA:   3'- -GUAGCUACa---GCUGU---AGCCGuaGCUGc -5'
8483 3' -51 NC_002169.1 + 4449 0.7 0.935202
Target:  5'- uGUCGGUGUCGGUAUCGuCAUCGuccuCGa -3'
miRNA:   3'- gUAGCUACAGCUGUAGCcGUAGCu---GC- -5'
8483 3' -51 NC_002169.1 + 6782 0.77 0.623319
Target:  5'- aCGUCGAUGcCGAUGUCGaCAUCGAUGc -3'
miRNA:   3'- -GUAGCUACaGCUGUAGCcGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 6836 0.67 0.985068
Target:  5'- uUAUCGAcguUGUCGuCGUCGuCGUCGuCGg -3'
miRNA:   3'- -GUAGCU---ACAGCuGUAGCcGUAGCuGC- -5'
8483 3' -51 NC_002169.1 + 6907 0.88 0.187858
Target:  5'- gCAUCGAcGUCGGCAggGGCAUCGACGu -3'
miRNA:   3'- -GUAGCUaCAGCUGUagCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 6943 1.09 0.009406
Target:  5'- gCAUCGAUGUCGACAUCGGCAUCGACGu -3'
miRNA:   3'- -GUAGCUACAGCUGUAGCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 15262 0.8 0.489797
Target:  5'- -cUUGAUGUCGACGagGGgAUCGACGa -3'
miRNA:   3'- guAGCUACAGCUGUagCCgUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 19183 0.68 0.971007
Target:  5'- aGUCGGUcagaUCGA---CGGCGUCGACGg -3'
miRNA:   3'- gUAGCUAc---AGCUguaGCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 22096 0.73 0.814004
Target:  5'- aAUCGAUaaacacccGUCuGACGUCGGCGUCGuGCa -3'
miRNA:   3'- gUAGCUA--------CAG-CUGUAGCCGUAGC-UGc -5'
8483 3' -51 NC_002169.1 + 24352 0.66 0.992181
Target:  5'- aAUCGuUGUCGGCGUCaugGGUguacacGUUGGCGa -3'
miRNA:   3'- gUAGCuACAGCUGUAG---CCG------UAGCUGC- -5'
8483 3' -51 NC_002169.1 + 32871 0.66 0.992181
Target:  5'- aGUCGugauaaguuUGUCGACGaCGuCGUCGACGc -3'
miRNA:   3'- gUAGCu--------ACAGCUGUaGCcGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 35694 0.67 0.985068
Target:  5'- cCGUUGAugacaaacuUGUCGuauuCGUCGGCAUaaaaguaGACGg -3'
miRNA:   3'- -GUAGCU---------ACAGCu---GUAGCCGUAg------CUGC- -5'
8483 3' -51 NC_002169.1 + 44712 0.76 0.665398
Target:  5'- uGUUGAUGUUGACuauacuGUCGGCggCGGCGa -3'
miRNA:   3'- gUAGCUACAGCUG------UAGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 48181 0.66 0.994125
Target:  5'- aAUCGAgauagCGGCAUCgcgGGCAgaccCGACGa -3'
miRNA:   3'- gUAGCUaca--GCUGUAG---CCGUa---GCUGC- -5'
8483 3' -51 NC_002169.1 + 53536 0.68 0.976467
Target:  5'- -cUCGGUGUUGACGagaaucgagucuUUGGCuuugaucacgaaAUCGACGg -3'
miRNA:   3'- guAGCUACAGCUGU------------AGCCG------------UAGCUGC- -5'
8483 3' -51 NC_002169.1 + 53642 0.69 0.961199
Target:  5'- aGUCGuUGUCGAUgacaccggCGGCggCGACGa -3'
miRNA:   3'- gUAGCuACAGCUGua------GCCGuaGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.