miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8483 3' -51 NC_002169.1 + 133819 0.72 0.871939
Target:  5'- --cCGGUuUCGACGUUGGUcUCGACGa -3'
miRNA:   3'- guaGCUAcAGCUGUAGCCGuAGCUGC- -5'
8483 3' -51 NC_002169.1 + 133662 0.74 0.786389
Target:  5'- aCAUCGAcccaUCGGCGUCGGCAUacaggguuuggcCGACGc -3'
miRNA:   3'- -GUAGCUac--AGCUGUAGCCGUA------------GCUGC- -5'
8483 3' -51 NC_002169.1 + 128819 0.72 0.848338
Target:  5'- uCGUCGaAUGUCGACAaCGGCAaaGAUa -3'
miRNA:   3'- -GUAGC-UACAGCUGUaGCCGUagCUGc -5'
8483 3' -51 NC_002169.1 + 124922 0.72 0.879358
Target:  5'- -cUCGGUGggggCGGCggCGGCggCGGCGg -3'
miRNA:   3'- guAGCUACa---GCUGuaGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 124387 0.81 0.414449
Target:  5'- gCGUCGAuggugaguaUGUCGucuuCGUCGGCAUCGACu -3'
miRNA:   3'- -GUAGCU---------ACAGCu---GUAGCCGUAGCUGc -5'
8483 3' -51 NC_002169.1 + 121409 0.69 0.949303
Target:  5'- -cUUGAUGaUGACAUUGGCAUaGGCGu -3'
miRNA:   3'- guAGCUACaGCUGUAGCCGUAgCUGC- -5'
8483 3' -51 NC_002169.1 + 120407 0.8 0.480015
Target:  5'- aAUCGAUGUUGAUGUUGGCGcUGACGa -3'
miRNA:   3'- gUAGCUACAGCUGUAGCCGUaGCUGC- -5'
8483 3' -51 NC_002169.1 + 117411 0.67 0.983187
Target:  5'- aCGUCG---UCGACAUUGGCAUCa--- -3'
miRNA:   3'- -GUAGCuacAGCUGUAGCCGUAGcugc -5'
8483 3' -51 NC_002169.1 + 115261 0.66 0.992181
Target:  5'- --aUGAUGUCGAUGUCGuauuCcUCGACGa -3'
miRNA:   3'- guaGCUACAGCUGUAGCc---GuAGCUGC- -5'
8483 3' -51 NC_002169.1 + 113481 0.66 0.993209
Target:  5'- --gCGuuUGUCGugAUCGGaCAUgGAUGg -3'
miRNA:   3'- guaGCu-ACAGCugUAGCC-GUAgCUGC- -5'
8483 3' -51 NC_002169.1 + 112751 0.7 0.938694
Target:  5'- gCGUUGGUugucGUCGACAaaguuaacgcaaugUCGGCGUCGuCGu -3'
miRNA:   3'- -GUAGCUA----CAGCUGU--------------AGCCGUAGCuGC- -5'
8483 3' -51 NC_002169.1 + 109405 0.66 0.991034
Target:  5'- uUAUCGucacUGUCGACGUCGuCGUUGuCGu -3'
miRNA:   3'- -GUAGCu---ACAGCUGUAGCcGUAGCuGC- -5'
8483 3' -51 NC_002169.1 + 108713 0.66 0.989758
Target:  5'- cCGUCGuggaAUGUggCGGCggCGGCggCGACGa -3'
miRNA:   3'- -GUAGC----UACA--GCUGuaGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 107515 0.68 0.978661
Target:  5'- uCGUUGGUGuuuUCGGCGaCGGCAUugguggcCGACGa -3'
miRNA:   3'- -GUAGCUAC---AGCUGUaGCCGUA-------GCUGC- -5'
8483 3' -51 NC_002169.1 + 107329 0.78 0.570933
Target:  5'- aGUCcGUGUaCGACAacggCGGCAUCGACGa -3'
miRNA:   3'- gUAGcUACA-GCUGUa---GCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 102143 0.68 0.971007
Target:  5'- aGUUGGUGUCGuuuUCGGCGUCauaGCGu -3'
miRNA:   3'- gUAGCUACAGCuguAGCCGUAGc--UGC- -5'
8483 3' -51 NC_002169.1 + 100023 0.66 0.993209
Target:  5'- uCGUCaAUGUCGucauCGUCGG-AUUGACGc -3'
miRNA:   3'- -GUAGcUACAGCu---GUAGCCgUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 99774 0.7 0.935202
Target:  5'- aAUCGGaugaauagaucUGUCaauGAUAUCGGCAucUCGGCGa -3'
miRNA:   3'- gUAGCU-----------ACAG---CUGUAGCCGU--AGCUGC- -5'
8483 3' -51 NC_002169.1 + 97079 0.68 0.976467
Target:  5'- --aUGcgGUCGACGcugccgaCGGUGUCGACGa -3'
miRNA:   3'- guaGCuaCAGCUGUa------GCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 96911 0.66 0.993209
Target:  5'- gCGUCG---UCGACAccgUCGGCAgcgUCGACc -3'
miRNA:   3'- -GUAGCuacAGCUGU---AGCCGU---AGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.