miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8483 3' -51 NC_002169.1 + 102143 0.68 0.971007
Target:  5'- aGUUGGUGUCGuuuUCGGCGUCauaGCGu -3'
miRNA:   3'- gUAGCUACAGCuguAGCCGUAGc--UGC- -5'
8483 3' -51 NC_002169.1 + 1329 0.7 0.93
Target:  5'- --aCGAUGaCGGCggCGGCggCGGCGg -3'
miRNA:   3'- guaGCUACaGCUGuaGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 4449 0.7 0.935202
Target:  5'- uGUCGGUGUCGGUAUCGuCAUCGuccuCGa -3'
miRNA:   3'- gUAGCUACAGCUGUAGCcGUAGCu---GC- -5'
8483 3' -51 NC_002169.1 + 99774 0.7 0.935202
Target:  5'- aAUCGGaugaauagaucUGUCaauGAUAUCGGCAucUCGGCGa -3'
miRNA:   3'- gUAGCU-----------ACAG---CUGUAGCCGU--AGCUGC- -5'
8483 3' -51 NC_002169.1 + 112751 0.7 0.938694
Target:  5'- gCGUUGGUugucGUCGACAaaguuaacgcaaugUCGGCGUCGuCGu -3'
miRNA:   3'- -GUAGCUA----CAGCUGU--------------AGCCGUAGCuGC- -5'
8483 3' -51 NC_002169.1 + 1675 0.7 0.940152
Target:  5'- -uUCGA---CGACGUCGGUggCGACGg -3'
miRNA:   3'- guAGCUacaGCUGUAGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 91705 0.7 0.944852
Target:  5'- --aCGAUGgcgaCGGCGUCGuCGUCGACa -3'
miRNA:   3'- guaGCUACa---GCUGUAGCcGUAGCUGc -5'
8483 3' -51 NC_002169.1 + 59495 0.68 0.96796
Target:  5'- -uUCGAccaUGUCGAgGaUGGCuUCGACGg -3'
miRNA:   3'- guAGCU---ACAGCUgUaGCCGuAGCUGC- -5'
8483 3' -51 NC_002169.1 + 19183 0.68 0.971007
Target:  5'- aGUCGGUcagaUCGA---CGGCGUCGACGg -3'
miRNA:   3'- gUAGCUAc---AGCUguaGCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 57757 0.71 0.906662
Target:  5'- -uUCGAcguaaaUGUCGugcACGUCGGCGUCgGACa -3'
miRNA:   3'- guAGCU------ACAGC---UGUAGCCGUAG-CUGc -5'
8483 3' -51 NC_002169.1 + 75048 0.71 0.886546
Target:  5'- aCAUCGGccgGaccaUCGACAUCGGCcggaccAUCGACa -3'
miRNA:   3'- -GUAGCUa--C----AGCUGUAGCCG------UAGCUGc -5'
8483 3' -51 NC_002169.1 + 124922 0.72 0.879358
Target:  5'- -cUCGGUGggggCGGCggCGGCggCGGCGg -3'
miRNA:   3'- guAGCUACa---GCUGuaGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 120407 0.8 0.480015
Target:  5'- aAUCGAUGUUGAUGUUGGCGcUGACGa -3'
miRNA:   3'- gUAGCUACAGCUGUAGCCGUaGCUGC- -5'
8483 3' -51 NC_002169.1 + 15262 0.8 0.489797
Target:  5'- -cUUGAUGUCGACGagGGgAUCGACGa -3'
miRNA:   3'- guAGCUACAGCUGUagCCgUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 74994 0.78 0.581348
Target:  5'- aCAUCGGcuggaccGUCGACAUCGGCuggaccGUCGACa -3'
miRNA:   3'- -GUAGCUa------CAGCUGUAGCCG------UAGCUGc -5'
8483 3' -51 NC_002169.1 + 6782 0.77 0.623319
Target:  5'- aCGUCGAUGcCGAUGUCGaCAUCGAUGc -3'
miRNA:   3'- -GUAGCUACaGCUGUAGCcGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 128819 0.72 0.848338
Target:  5'- uCGUCGaAUGUCGACAaCGGCAaaGAUa -3'
miRNA:   3'- -GUAGC-UACAGCUGUaGCCGUagCUGc -5'
8483 3' -51 NC_002169.1 + 71812 0.72 0.856422
Target:  5'- -uUCGAUGgCGugAUCGGUcaCGACGg -3'
miRNA:   3'- guAGCUACaGCugUAGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 77456 0.72 0.856422
Target:  5'- aGUCGAcgccGUgGACGcuacacgguUCGGCGUCGACGc -3'
miRNA:   3'- gUAGCUa---CAgCUGU---------AGCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 133819 0.72 0.871939
Target:  5'- --cCGGUuUCGACGUUGGUcUCGACGa -3'
miRNA:   3'- guaGCUAcAGCUGUAGCCGuAGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.