Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8483 | 3' | -51 | NC_002169.1 | + | 89093 | 0.66 | 0.994125 |
Target: 5'- -uUCGGUacGUCGACgaaauacaGUCGGCAcaGACGa -3' miRNA: 3'- guAGCUA--CAGCUG--------UAGCCGUagCUGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 75225 | 0.7 | 0.918835 |
Target: 5'- --cCGAUGUCGAUGgucCGGCcgauGUCGAUGg -3' miRNA: 3'- guaGCUACAGCUGUa--GCCG----UAGCUGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 60105 | 0.71 | 0.893494 |
Target: 5'- aCGUCG--GUCGAaAUUGGUGUCGACGa -3' miRNA: 3'- -GUAGCuaCAGCUgUAGCCGUAGCUGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 6943 | 1.09 | 0.009406 |
Target: 5'- gCAUCGAUGUCGACAUCGGCAUCGACGu -3' miRNA: 3'- -GUAGCUACAGCUGUAGCCGUAGCUGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 115261 | 0.66 | 0.992181 |
Target: 5'- --aUGAUGUCGAUGUCGuauuCcUCGACGa -3' miRNA: 3'- guaGCUACAGCUGUAGCc---GuAGCUGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 109405 | 0.66 | 0.991034 |
Target: 5'- uUAUCGucacUGUCGACGUCGuCGUUGuCGu -3' miRNA: 3'- -GUAGCu---ACAGCUGUAGCcGUAGCuGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 6836 | 0.67 | 0.985068 |
Target: 5'- uUAUCGAcguUGUCGuCGUCGuCGUCGuCGg -3' miRNA: 3'- -GUAGCU---ACAGCuGUAGCcGUAGCuGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 117411 | 0.67 | 0.983187 |
Target: 5'- aCGUCG---UCGACAUUGGCAUCa--- -3' miRNA: 3'- -GUAGCuacAGCUGUAGCCGUAGcugc -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 74901 | 0.69 | 0.964693 |
Target: 5'- --aCGAUGgCGACGaCGGCGgagaCGACGa -3' miRNA: 3'- guaGCUACaGCUGUaGCCGUa---GCUGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 2114 | 0.7 | 0.918835 |
Target: 5'- aCGUCGAUGacaaCGACAccaUCGGCggCGAUa -3' miRNA: 3'- -GUAGCUACa---GCUGU---AGCCGuaGCUGc -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 53642 | 0.69 | 0.961199 |
Target: 5'- aGUCGuUGUCGAUgacaccggCGGCggCGACGa -3' miRNA: 3'- gUAGCuACAGCUGua------GCCGuaGCUGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 53536 | 0.68 | 0.976467 |
Target: 5'- -cUCGGUGUUGACGagaaucgagucuUUGGCuuugaucacgaaAUCGACGg -3' miRNA: 3'- guAGCUACAGCUGU------------AGCCG------------UAGCUGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 56753 | 0.66 | 0.993209 |
Target: 5'- cCcgCGuuuaCGAgAUCGGCGUCGAUGu -3' miRNA: 3'- -GuaGCuacaGCUgUAGCCGUAGCUGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 121409 | 0.69 | 0.949303 |
Target: 5'- -cUUGAUGaUGACAUUGGCAUaGGCGu -3' miRNA: 3'- guAGCUACaGCUGUAGCCGUAgCUGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 100023 | 0.66 | 0.993209 |
Target: 5'- uCGUCaAUGUCGucauCGUCGG-AUUGACGc -3' miRNA: 3'- -GUAGcUACAGCu---GUAGCCgUAGCUGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 97079 | 0.68 | 0.976467 |
Target: 5'- --aUGcgGUCGACGcugccgaCGGUGUCGACGa -3' miRNA: 3'- guaGCuaCAGCUGUa------GCCGUAGCUGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 81951 | 0.7 | 0.93 |
Target: 5'- uCGUCGAUGUCGACGUCaaauuuGUUGAUGu -3' miRNA: 3'- -GUAGCUACAGCUGUAGccg---UAGCUGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 66858 | 0.71 | 0.915289 |
Target: 5'- gAUCGAUGUCGAgcaggcucuuguaguCAUCGGaggUGACGc -3' miRNA: 3'- gUAGCUACAGCU---------------GUAGCCguaGCUGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 113481 | 0.66 | 0.993209 |
Target: 5'- --gCGuuUGUCGugAUCGGaCAUgGAUGg -3' miRNA: 3'- guaGCu-ACAGCugUAGCC-GUAgCUGC- -5' |
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8483 | 3' | -51 | NC_002169.1 | + | 35694 | 0.67 | 0.985068 |
Target: 5'- cCGUUGAugacaaacuUGUCGuauuCGUCGGCAUaaaaguaGACGg -3' miRNA: 3'- -GUAGCU---------ACAGCu---GUAGCCGUAg------CUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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