miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8483 3' -51 NC_002169.1 + 6782 0.77 0.623319
Target:  5'- aCGUCGAUGcCGAUGUCGaCAUCGAUGc -3'
miRNA:   3'- -GUAGCUACaGCUGUAGCcGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 128819 0.72 0.848338
Target:  5'- uCGUCGaAUGUCGACAaCGGCAaaGAUa -3'
miRNA:   3'- -GUAGC-UACAGCUGUaGCCGUagCUGc -5'
8483 3' -51 NC_002169.1 + 71812 0.72 0.856422
Target:  5'- -uUCGAUGgCGugAUCGGUcaCGACGg -3'
miRNA:   3'- guAGCUACaGCugUAGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 77456 0.72 0.856422
Target:  5'- aGUCGAcgccGUgGACGcuacacgguUCGGCGUCGACGc -3'
miRNA:   3'- gUAGCUa---CAgCUGU---------AGCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 4449 0.7 0.935202
Target:  5'- uGUCGGUGUCGGUAUCGuCAUCGuccuCGa -3'
miRNA:   3'- gUAGCUACAGCUGUAGCcGUAGCu---GC- -5'
8483 3' -51 NC_002169.1 + 1329 0.7 0.93
Target:  5'- --aCGAUGaCGGCggCGGCggCGGCGg -3'
miRNA:   3'- guaGCUACaGCUGuaGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 57757 0.71 0.906662
Target:  5'- -uUCGAcguaaaUGUCGugcACGUCGGCGUCgGACa -3'
miRNA:   3'- guAGCU------ACAGC---UGUAGCCGUAG-CUGc -5'
8483 3' -51 NC_002169.1 + 75048 0.71 0.886546
Target:  5'- aCAUCGGccgGaccaUCGACAUCGGCcggaccAUCGACa -3'
miRNA:   3'- -GUAGCUa--C----AGCUGUAGCCG------UAGCUGc -5'
8483 3' -51 NC_002169.1 + 124922 0.72 0.879358
Target:  5'- -cUCGGUGggggCGGCggCGGCggCGGCGg -3'
miRNA:   3'- guAGCUACa---GCUGuaGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 133819 0.72 0.871939
Target:  5'- --cCGGUuUCGACGUUGGUcUCGACGa -3'
miRNA:   3'- guaGCUAcAGCUGUAGCCGuAGCUGC- -5'
8483 3' -51 NC_002169.1 + 97079 0.68 0.976467
Target:  5'- --aUGcgGUCGACGcugccgaCGGUGUCGACGa -3'
miRNA:   3'- guaGCuaCAGCUGUa------GCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 117411 0.67 0.983187
Target:  5'- aCGUCG---UCGACAUUGGCAUCa--- -3'
miRNA:   3'- -GUAGCuacAGCUGUAGCCGUAGcugc -5'
8483 3' -51 NC_002169.1 + 6836 0.67 0.985068
Target:  5'- uUAUCGAcguUGUCGuCGUCGuCGUCGuCGg -3'
miRNA:   3'- -GUAGCU---ACAGCuGUAGCcGUAGCuGC- -5'
8483 3' -51 NC_002169.1 + 35694 0.67 0.985068
Target:  5'- cCGUUGAugacaaacuUGUCGuauuCGUCGGCAUaaaaguaGACGg -3'
miRNA:   3'- -GUAGCU---------ACAGCu---GUAGCCGUAg------CUGC- -5'
8483 3' -51 NC_002169.1 + 109405 0.66 0.991034
Target:  5'- uUAUCGucacUGUCGACGUCGuCGUUGuCGu -3'
miRNA:   3'- -GUAGCu---ACAGCUGUAGCcGUAGCuGC- -5'
8483 3' -51 NC_002169.1 + 115261 0.66 0.992181
Target:  5'- --aUGAUGUCGAUGUCGuauuCcUCGACGa -3'
miRNA:   3'- guaGCUACAGCUGUAGCc---GuAGCUGC- -5'
8483 3' -51 NC_002169.1 + 113481 0.66 0.993209
Target:  5'- --gCGuuUGUCGugAUCGGaCAUgGAUGg -3'
miRNA:   3'- guaGCu-ACAGCugUAGCC-GUAgCUGC- -5'
8483 3' -51 NC_002169.1 + 100023 0.66 0.993209
Target:  5'- uCGUCaAUGUCGucauCGUCGG-AUUGACGc -3'
miRNA:   3'- -GUAGcUACAGCu---GUAGCCgUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 56753 0.66 0.993209
Target:  5'- cCcgCGuuuaCGAgAUCGGCGUCGAUGu -3'
miRNA:   3'- -GuaGCuacaGCUgUAGCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 6943 1.09 0.009406
Target:  5'- gCAUCGAUGUCGACAUCGGCAUCGACGu -3'
miRNA:   3'- -GUAGCUACAGCUGUAGCCGUAGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.