miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8483 3' -51 NC_002169.1 + 55649 0.66 0.993209
Target:  5'- -uUUGAUGauuUCGACGUaCGcGCAUaCGACGu -3'
miRNA:   3'- guAGCUAC---AGCUGUA-GC-CGUA-GCUGC- -5'
8483 3' -51 NC_002169.1 + 56753 0.66 0.993209
Target:  5'- cCcgCGuuuaCGAgAUCGGCGUCGAUGu -3'
miRNA:   3'- -GuaGCuacaGCUgUAGCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 57757 0.71 0.906662
Target:  5'- -uUCGAcguaaaUGUCGugcACGUCGGCGUCgGACa -3'
miRNA:   3'- guAGCU------ACAGC---UGUAGCCGUAG-CUGc -5'
8483 3' -51 NC_002169.1 + 59495 0.68 0.96796
Target:  5'- -uUCGAccaUGUCGAgGaUGGCuUCGACGg -3'
miRNA:   3'- guAGCU---ACAGCUgUaGCCGuAGCUGC- -5'
8483 3' -51 NC_002169.1 + 60105 0.71 0.893494
Target:  5'- aCGUCG--GUCGAaAUUGGUGUCGACGa -3'
miRNA:   3'- -GUAGCuaCAGCUgUAGCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 66858 0.71 0.915289
Target:  5'- gAUCGAUGUCGAgcaggcucuuguaguCAUCGGaggUGACGc -3'
miRNA:   3'- gUAGCUACAGCU---------------GUAGCCguaGCUGC- -5'
8483 3' -51 NC_002169.1 + 71812 0.72 0.856422
Target:  5'- -uUCGAUGgCGugAUCGGUcaCGACGg -3'
miRNA:   3'- guAGCUACaGCugUAGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 74901 0.69 0.964693
Target:  5'- --aCGAUGgCGACGaCGGCGgagaCGACGa -3'
miRNA:   3'- guaGCUACaGCUGUaGCCGUa---GCUGC- -5'
8483 3' -51 NC_002169.1 + 74994 0.78 0.581348
Target:  5'- aCAUCGGcuggaccGUCGACAUCGGCuggaccGUCGACa -3'
miRNA:   3'- -GUAGCUa------CAGCUGUAGCCG------UAGCUGc -5'
8483 3' -51 NC_002169.1 + 75048 0.71 0.886546
Target:  5'- aCAUCGGccgGaccaUCGACAUCGGCcggaccAUCGACa -3'
miRNA:   3'- -GUAGCUa--C----AGCUGUAGCCG------UAGCUGc -5'
8483 3' -51 NC_002169.1 + 75189 0.74 0.776878
Target:  5'- --cCGAUGUCGAUGgucCGGCcgauGUCGACGg -3'
miRNA:   3'- guaGCUACAGCUGUa--GCCG----UAGCUGC- -5'
8483 3' -51 NC_002169.1 + 75225 0.7 0.918835
Target:  5'- --cCGAUGUCGAUGgucCGGCcgauGUCGAUGg -3'
miRNA:   3'- guaGCUACAGCUGUa--GCCG----UAGCUGC- -5'
8483 3' -51 NC_002169.1 + 77456 0.72 0.856422
Target:  5'- aGUCGAcgccGUgGACGcuacacgguUCGGCGUCGACGc -3'
miRNA:   3'- gUAGCUa---CAgCUGU---------AGCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 81951 0.7 0.93
Target:  5'- uCGUCGAUGUCGACGUCaaauuuGUUGAUGu -3'
miRNA:   3'- -GUAGCUACAGCUGUAGccg---UAGCUGC- -5'
8483 3' -51 NC_002169.1 + 85867 0.67 0.981132
Target:  5'- aCGUCGaAUG-CGcCGUCGGCGaCGACc -3'
miRNA:   3'- -GUAGC-UACaGCuGUAGCCGUaGCUGc -5'
8483 3' -51 NC_002169.1 + 89093 0.66 0.994125
Target:  5'- -uUCGGUacGUCGACgaaauacaGUCGGCAcaGACGa -3'
miRNA:   3'- guAGCUA--CAGCUG--------UAGCCGUagCUGC- -5'
8483 3' -51 NC_002169.1 + 91705 0.7 0.944852
Target:  5'- --aCGAUGgcgaCGGCGUCGuCGUCGACa -3'
miRNA:   3'- guaGCUACa---GCUGUAGCcGUAGCUGc -5'
8483 3' -51 NC_002169.1 + 96911 0.66 0.993209
Target:  5'- gCGUCG---UCGACAccgUCGGCAgcgUCGACc -3'
miRNA:   3'- -GUAGCuacAGCUGU---AGCCGU---AGCUGc -5'
8483 3' -51 NC_002169.1 + 97079 0.68 0.976467
Target:  5'- --aUGcgGUCGACGcugccgaCGGUGUCGACGa -3'
miRNA:   3'- guaGCuaCAGCUGUa------GCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 99774 0.7 0.935202
Target:  5'- aAUCGGaugaauagaucUGUCaauGAUAUCGGCAucUCGGCGa -3'
miRNA:   3'- gUAGCU-----------ACAG---CUGUAGCCGU--AGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.