Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 10904 | 1.1 | 0.044716 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAAUCAUGUACUAGAAACGAAAGCAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 11230 | 1.08 | 0.062745 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaAUCAUGUACUAGAAACGAAAGCAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 71829 | 1.06 | 0.082551 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGUACUAGAAACGAAAGCAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 52857 | 1.06 | 0.082551 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGUACUAGAAACGAAAGCAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 53123 | 1.05 | 0.090391 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaUCAUGUACUAGAAACGAAAGCAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 53315 | 1.03 | 0.118356 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUACUAGAAACGAAAGCAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 104956 | 1.03 | 0.118356 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUACUAGAAACGAAAGCAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 105287 | 1.01 | 0.154212 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3' miRNA: 3'- aaAUCAUGUACUAGAAACGAAAGCAg -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 105400 | 1 | 0.168207 |
Target: 5'- cUUUAGUACAcGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 11477 | 0.98 | 0.211202 |
Target: 5'- -aUAGUACAcGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaAUCAUGUaCUAGAAACGAAAGCAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 119418 | 0.98 | 0.211202 |
Target: 5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 120037 | 0.98 | 0.211202 |
Target: 5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 10935 | 0.97 | 0.236062 |
Target: 5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 119796 | 0.97 | 0.236062 |
Target: 5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 104833 | 0.97 | 0.242648 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUCAUGUACUAGAAACGAAAGcAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 42255 | 0.97 | 0.242648 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUCAUGUACUAGAAACGAAAGcAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 119616 | 0.97 | 0.242648 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUCAUGUACUAGAAACGAAAGcAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 11012 | 0.97 | 0.242648 |
Target: 5'- gUUUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUCAUGUACUAGAAACGAAAGcAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 11132 | 0.96 | 0.263329 |
Target: 5'- gUUUAaUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAAUcAUGUACUAGAAACGAAAGCAG- -5' |
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8484 | 3' | -42.1 | NC_002169.1 | + | 11442 | 0.96 | 0.270534 |
Target: 5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGUaCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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