miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8484 3' -42.1 NC_002169.1 + 52898 0.8 0.927925
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AAAUCAUGUAcUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 52784 0.93 0.38819
Target:  5'- --cGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 105501 0.93 0.38819
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 10709 0.88 0.580463
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 11036 0.88 0.580463
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 10817 0.88 0.603615
Target:  5'- -cUAGUACAcGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUaCUAgAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 105091 0.87 0.661778
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 11173 0.84 0.784665
Target:  5'- ----aUGCAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 71637 0.81 0.89408
Target:  5'- --cAGUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 104769 0.94 0.325433
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- aaaucAUGUACUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 53042 0.94 0.325433
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 42188 0.95 0.317108
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 104956 1.03 0.118356
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUACUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 119418 0.98 0.211202
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 120037 0.98 0.211202
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 10935 0.97 0.236062
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 42255 0.97 0.242648
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUACUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 104833 0.97 0.242648
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUACUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 11442 0.96 0.270534
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 119602 0.95 0.308943
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.