miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8484 3' -42.1 NC_002169.1 + 10326 0.71 0.999911
Target:  5'- ---cGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aaauCAUGUACU--------AGAAACGaaAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 10709 0.88 0.580463
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 10713 0.66 1
Target:  5'- uUUUAGUACAcaAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- -AAAUCAUGUacUAgAAACGAA----------AGCAG- -5'
8484 3' -42.1 NC_002169.1 + 10817 0.88 0.603615
Target:  5'- -cUAGUACAcGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUaCUAgAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 10904 1.1 0.044716
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUCAUGUACUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 10935 0.97 0.236062
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 11012 0.97 0.242648
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUACUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 11036 0.88 0.580463
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 11132 0.96 0.263329
Target:  5'- gUUUAaUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUcAUGUACUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 11173 0.84 0.784665
Target:  5'- ----aUGCAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 11230 1.08 0.062745
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 11366 0.94 0.33392
Target:  5'- uUUUAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUcAUGUACUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 11442 0.96 0.270534
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 11477 0.98 0.211202
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 11570 0.77 0.981107
Target:  5'- -cUAGUACucGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 11636 0.85 0.763394
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGUACUAgAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 11761 0.82 0.87019
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 41111 0.66 1
Target:  5'- -aUAGUGCG-GAUCggUGCUcUCGa- -3'
miRNA:   3'- aaAUCAUGUaCUAGaaACGAaAGCag -5'
8484 3' -42.1 NC_002169.1 + 41772 0.75 0.994893
Target:  5'- ----aUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGuaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 41873 0.71 0.999911
Target:  5'- ----aUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.