miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8484 3' -42.1 NC_002169.1 + 120230 0.84 0.784665
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 120037 0.98 0.211202
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 119796 0.97 0.236062
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 119616 0.97 0.242648
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUACUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 119602 0.95 0.308943
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 119518 0.83 0.843817
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 119418 0.98 0.211202
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 119325 0.75 0.992941
Target:  5'- -aUAG-AC--GAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCaUGuaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 105690 0.69 0.999987
Target:  5'- ----aUACAcGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 105600 0.74 0.997934
Target:  5'- ----aUACAcaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUacUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 105501 0.93 0.38819
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 105407 0.7 0.999952
Target:  5'- cUUUAaUACAcGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AAAUcAUGUaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 105400 1 0.168207
Target:  5'- cUUUAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 105322 0.72 0.999284
Target:  5'- --aAGUACAcaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUacUAgAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 105287 1.01 0.154212
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGCAg -5'
8484 3' -42.1 NC_002169.1 + 105202 0.79 0.954089
Target:  5'- uUUUAaUACAcGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUcAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 105145 0.78 0.966223
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaucaUGUACUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 105091 0.87 0.661778
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 105039 0.75 0.992941
Target:  5'- -aUAuUGCAUcagccuacucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUcAUGUA----------CUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 104956 0.75 0.99569
Target:  5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAuGUacUAGAAACGAAAGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.