miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8484 3' -42.1 NC_002169.1 + 41999 0.8 0.927925
Target:  5'- --cAGUACAcGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 42065 0.91 0.44794
Target:  5'- aUUUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGuaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 42188 0.95 0.317108
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 42192 0.96 0.270534
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 42255 0.97 0.242648
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUACUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 42376 0.7 0.999975
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucaUGUacUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 42453 0.71 0.999731
Target:  5'- --aAGUcaaACAcaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCA---UGUacUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 52662 0.77 0.981107
Target:  5'- uUUUAGUACAcGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAgAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 52784 0.93 0.38819
Target:  5'- --cGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 52857 1.06 0.082551
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 52898 0.8 0.927925
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AAAUCAUGUAcUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 52978 0.78 0.966223
Target:  5'- uUUUAGUACAccAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUacUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 53042 0.94 0.325433
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 53123 1.05 0.090391
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUCAUGUACUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 53233 0.92 0.407524
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGUACUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 53315 1.03 0.118356
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUACUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 71637 0.81 0.89408
Target:  5'- --cAGUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 71829 1.06 0.082551
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 104769 0.94 0.325433
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- aaaucAUGUACUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 104833 0.97 0.242648
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUACUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.