Results 21 - 40 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 120037 | 0.98 | 0.211202 |
Target: 5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 10935 | 0.97 | 0.236062 |
Target: 5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 42255 | 0.97 | 0.242648 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUCAUGUACUAGAAACGAAAGcAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 104833 | 0.97 | 0.242648 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUCAUGUACUAGAAACGAAAGcAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 11442 | 0.96 | 0.270534 |
Target: 5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGUaCUAGAAACGAAAGCAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 119602 | 0.95 | 0.308943 |
Target: 5'- --cAGUACAcGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaUCAUGUaCUAGAAACGAAAGCAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 10709 | 0.88 | 0.580463 |
Target: 5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGuaCUAGAAACGAAAGCAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 105501 | 0.93 | 0.38819 |
Target: 5'- --cAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUaCUAGAAACGAAAGCAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 52784 | 0.93 | 0.38819 |
Target: 5'- --cGGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUaCUAGAAACGAAAGCAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 104769 | 0.94 | 0.325433 |
Target: 5'- ----aUACAUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- aaaucAUGUACUAGAAACGAAAGCAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 53042 | 0.94 | 0.325433 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- aaAUCAUGUACUAGAAACGAAAGcAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 42188 | 0.95 | 0.317108 |
Target: 5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- aaAUCAUGUACUAGAAACGAAAGcAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 52978 | 0.78 | 0.966223 |
Target: 5'- uUUUAGUACAccAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUCAUGUacUAGAAACGAAAGcAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 105039 | 0.75 | 0.992941 |
Target: 5'- -aUAuUGCAUcagccuacucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUcAUGUA----------CUAGAAACGAAAGCAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 104956 | 0.75 | 0.99569 |
Target: 5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAuGUacUAGAAACGAAAGCAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 105600 | 0.74 | 0.997934 |
Target: 5'- ----aUACAcaAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaucAUGUacUAGAAACGAAAGCAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 42453 | 0.71 | 0.999731 |
Target: 5'- --aAGUcaaACAcaAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCA---UGUacUAGAAACGAAAGCAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 42376 | 0.7 | 0.999975 |
Target: 5'- -----cACA--AUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaucaUGUacUAGAAACGAAAGCAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 105690 | 0.69 | 0.999987 |
Target: 5'- ----aUACAcGAUCUUUGCUUUC-UCg -3' miRNA: 3'- aaaucAUGUaCUAGAAACGAAAGcAG- -5' |
|||||||
8484 | 3' | -42.1 | NC_002169.1 | + | 10904 | 1.1 | 0.044716 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAAUCAUGUACUAGAAACGAAAGCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home