miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8486 3' -39.8 NC_002169.1 + 11132 1.11 0.0759
Target:  5'- gUUUAAUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 10904 1.11 0.0759
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11366 1.09 0.100139
Target:  5'- uUUUAAUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11230 1.08 0.106442
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 71829 1.06 0.139671
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 52857 1.06 0.139671
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 53123 1.05 0.152718
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 104767 1.05 0.152718
Target:  5'- --cAAUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- aaaUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 53315 1.03 0.198705
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 104956 1.03 0.198705
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 53235 1.03 0.198705
Target:  5'- --cAAUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 105287 1.01 0.256302
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- aaAUUAUGUACUAGAAACGAAAGCAg -5'
8486 3' -39.8 NC_002169.1 + 105400 1 0.278338
Target:  5'- cUUUAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11477 0.98 0.344399
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 119418 0.98 0.344399
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 120037 0.98 0.344399
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 120233 0.98 0.353408
Target:  5'- -gUAAUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11012 0.97 0.391083
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 119796 0.97 0.391083
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 42255 0.97 0.391083
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.