miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8486 3' -39.8 NC_002169.1 + 10326 0.7 1
Target:  5'- ---cGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aaauUAUGUACU--------AGAAACGaaAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 10520 0.67 1
Target:  5'- -----cACAacGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaauuaUGUa-CUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 10709 0.88 0.794821
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGuaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 10817 0.87 0.815368
Target:  5'- -cUAGUACAcGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUUAUGUaCUAgAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 10904 1.11 0.0759
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 10935 0.97 0.391083
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11012 0.97 0.391083
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 11036 0.88 0.794821
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGuaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11132 1.11 0.0759
Target:  5'- gUUUAAUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11171 0.94 0.484756
Target:  5'- --aAAUGCAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11230 1.08 0.106442
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11281 0.75 0.999645
Target:  5'- aUUUAAUACAcaAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUacUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 11366 1.09 0.100139
Target:  5'- uUUUAAUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11442 0.96 0.431283
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11477 0.98 0.344399
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11563 0.66 1
Target:  5'- cUUGA-ACAccAUCUUUGUUUUUGUCa -3'
miRNA:   3'- aAAUUaUGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11570 0.76 0.999417
Target:  5'- -cUAGUACucGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUUAUGuaCUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 11636 0.84 0.929586
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUUAUGUACUAgAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 11764 0.96 0.431283
Target:  5'- -aUAAUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 40347 0.67 1
Target:  5'- -----gACAUGAUUgauggGCUUuuUCGUCg -3'
miRNA:   3'- aaauuaUGUACUAGaaa--CGAA--AGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.