miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8486 3' -39.8 NC_002169.1 + 120600 0.66 1
Target:  5'- ----cUACAUGAcucugcuaaaUCUUUGCaagggcgUCGUCa -3'
miRNA:   3'- aaauuAUGUACU----------AGAAACGaa-----AGCAG- -5'
8486 3' -39.8 NC_002169.1 + 120233 0.98 0.353408
Target:  5'- -gUAAUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 120037 0.98 0.344399
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 119796 0.97 0.391083
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 119616 0.97 0.391083
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 119602 0.94 0.484756
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 119518 0.82 0.967752
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 119418 0.98 0.344399
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 119324 0.79 0.993635
Target:  5'- ---cAUAgAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauUAUgUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 105693 0.82 0.964038
Target:  5'- -gUAAUACAcGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aaAUUAUGUaCUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 105601 0.8 0.988263
Target:  5'- ---cAUACAcaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaauUAUGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 105501 0.92 0.587866
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 105407 0.83 0.935451
Target:  5'- cUUUAAUACAcGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 105400 1 0.278338
Target:  5'- cUUUAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 105322 0.71 0.999999
Target:  5'- --aAGUACAcaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUacUAgAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 105287 1.01 0.256302
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- aaAUUAUGUACUAGAAACGAAAGCAg -5'
8486 3' -39.8 NC_002169.1 + 105202 0.93 0.564405
Target:  5'- uUUUAAUACAcGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 105145 0.83 0.951134
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaauuaUGUACUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 105091 0.86 0.862615
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 105044 0.81 0.979902
Target:  5'- uUUUAAUauuGCAUcagccuacucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUA---UGUA----------CUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.