Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8486 | 3' | -39.8 | NC_002169.1 | + | 105407 | 0.83 | 0.935451 |
Target: 5'- cUUUAAUACAcGAUCUUUGCUUUCaUCc -3' miRNA: 3'- -AAAUUAUGUaCUAGAAACGAAAGcAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 53042 | 0.94 | 0.507023 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- aaAUUAUGUACUAGAAACGAAAGcAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 105202 | 0.93 | 0.564405 |
Target: 5'- uUUUAAUACAcGAUCUUUGCUUUUGUCc -3' miRNA: 3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 105501 | 0.92 | 0.587866 |
Target: 5'- --cAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUUAUGUaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 52784 | 0.92 | 0.599666 |
Target: 5'- --cGGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUUAUGUaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 10709 | 0.88 | 0.794821 |
Target: 5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUUAUGuaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 11036 | 0.88 | 0.794821 |
Target: 5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUUAUGuaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 10817 | 0.87 | 0.815368 |
Target: 5'- -cUAGUACAcGAUgUUUGCUUUCGUCg -3' miRNA: 3'- aaAUUAUGUaCUAgAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 105091 | 0.86 | 0.862615 |
Target: 5'- uUUUAGUACAcGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUUAUGUaCUAGAAACGAAAGcAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 42188 | 0.94 | 0.495833 |
Target: 5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- aaAUUAUGUACUAGAAACGAAAGcAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 119602 | 0.94 | 0.484756 |
Target: 5'- --cAGUACAcGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaUUAUGUaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 11171 | 0.94 | 0.484756 |
Target: 5'- --aAAUGCAcGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaUUAUGUaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 104767 | 1.05 | 0.152718 |
Target: 5'- --cAAUACAUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- aaaUUAUGUACUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 104956 | 1.03 | 0.198705 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUUAUGUACUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 119418 | 0.98 | 0.344399 |
Target: 5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 120037 | 0.98 | 0.344399 |
Target: 5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 42255 | 0.97 | 0.391083 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUUAUGUACUAGAAACGAAAGcAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 104833 | 0.97 | 0.391083 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUUAUGUACUAGAAACGAAAGcAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 10935 | 0.97 | 0.391083 |
Target: 5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 11442 | 0.96 | 0.431283 |
Target: 5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUUAUGUaCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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