miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8486 3' -39.8 NC_002169.1 + 104956 1.03 0.198705
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 119418 0.98 0.344399
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 120037 0.98 0.344399
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 42255 0.97 0.391083
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 104833 0.97 0.391083
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 10935 0.97 0.391083
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11442 0.96 0.431283
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 105501 0.92 0.587866
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 105202 0.93 0.564405
Target:  5'- uUUUAAUACAcGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 53042 0.94 0.507023
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUUAUGUACUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 42188 0.94 0.495833
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUUAUGUACUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 119602 0.94 0.484756
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11171 0.94 0.484756
Target:  5'- --aAAUGCAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 52978 0.77 0.998232
Target:  5'- uUUUAGUACAccAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUacUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 42445 0.74 0.999935
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauuaUGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 42376 0.74 0.999935
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauuaUGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 104956 0.73 0.999966
Target:  5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAuGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 40347 0.67 1
Target:  5'- -----gACAUGAUUgauggGCUUuuUCGUCg -3'
miRNA:   3'- aaauuaUGUACUAGaaa--CGAA--AGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11563 0.66 1
Target:  5'- cUUGA-ACAccAUCUUUGUUUUUGUCa -3'
miRNA:   3'- aAAUUaUGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11132 1.11 0.0759
Target:  5'- gUUUAAUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.