miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8486 3' -39.8 NC_002169.1 + 41771 0.81 0.977249
Target:  5'- ---cAUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauUAUGuaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 41872 0.76 0.998841
Target:  5'- ---cAUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaauUAUGUaCUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 41999 0.79 0.992528
Target:  5'- --cAGUACAcGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- aaaUUAUGUaCUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 42065 0.91 0.658916
Target:  5'- aUUUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGuaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 42188 0.94 0.495833
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUUAUGUACUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 42192 0.96 0.431283
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 42255 0.97 0.391083
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 42376 0.74 0.999935
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauuaUGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 42445 0.74 0.999935
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauuaUGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 52662 0.76 0.999417
Target:  5'- uUUUAGUACAcGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUaCUAgAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 52784 0.92 0.599666
Target:  5'- --cGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 52857 1.06 0.139671
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 52898 0.79 0.992528
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AAAUUAUGUAcUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 52978 0.77 0.998232
Target:  5'- uUUUAGUACAccAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUacUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 53042 0.94 0.507023
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUUAUGUACUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 53123 1.05 0.152718
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 53235 1.03 0.198705
Target:  5'- --cAAUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 53315 1.03 0.198705
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 71637 0.8 0.984508
Target:  5'- --cAGUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaUUAUGUaCUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 71829 1.06 0.139671
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUACUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.