miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8486 3' -39.8 NC_002169.1 + 120600 0.66 1
Target:  5'- ----cUACAUGAcucugcuaaaUCUUUGCaagggcgUCGUCa -3'
miRNA:   3'- aaauuAUGUACU----------AGAAACGaa-----AGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11012 0.97 0.391083
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 120233 0.98 0.353408
Target:  5'- -gUAAUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11132 1.11 0.0759
Target:  5'- gUUUAAUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 42376 0.74 0.999935
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauuaUGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 42445 0.74 0.999935
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauuaUGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 105601 0.8 0.988263
Target:  5'- ---cAUACAcaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaauUAUGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 105044 0.81 0.979902
Target:  5'- uUUUAAUauuGCAUcagccuacucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUA---UGUA----------CUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 105145 0.83 0.951134
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaauuaUGUACUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 119796 0.97 0.391083
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 42065 0.91 0.658916
Target:  5'- aUUUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGuaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 105693 0.82 0.964038
Target:  5'- -gUAAUACAcGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aaAUUAUGUaCUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 11563 0.66 1
Target:  5'- cUUGA-ACAccAUCUUUGUUUUUGUCa -3'
miRNA:   3'- aAAUUaUGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11764 0.96 0.431283
Target:  5'- -aUAAUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 40347 0.67 1
Target:  5'- -----gACAUGAUUgauggGCUUuuUCGUCg -3'
miRNA:   3'- aaauuaUGUACUAGaaa--CGAA--AGCAG- -5'
8486 3' -39.8 NC_002169.1 + 119518 0.82 0.967752
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- -AAAUUAUGUaCUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 42192 0.96 0.431283
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 119616 0.97 0.391083
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUACUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 104956 0.73 0.999966
Target:  5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAuGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 52978 0.77 0.998232
Target:  5'- uUUUAGUACAccAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUacUAGAAACGAAAGcAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.