Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8486 | 3' | -39.8 | NC_002169.1 | + | 41771 | 0.81 | 0.977249 |
Target: 5'- ---cAUACucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaauUAUGuaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 119518 | 0.82 | 0.967752 |
Target: 5'- uUUUAGUACAcGAUCUUUGCUUUUaUCg -3' miRNA: 3'- -AAAUUAUGUaCUAGAAACGAAAGcAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 105693 | 0.82 | 0.964038 |
Target: 5'- -gUAAUACAcGAUCUUUGCUUUC-UCg -3' miRNA: 3'- aaAUUAUGUaCUAGAAACGAAAGcAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 105145 | 0.83 | 0.951134 |
Target: 5'- -----cACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- aaauuaUGUACUAGAAACGAAAGcAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 105407 | 0.83 | 0.935451 |
Target: 5'- cUUUAAUACAcGAUCUUUGCUUUCaUCc -3' miRNA: 3'- -AAAUUAUGUaCUAGAAACGAAAGcAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 11636 | 0.84 | 0.929586 |
Target: 5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3' miRNA: 3'- aaAUUAUGUACUAgAAACGAAAGcAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 105091 | 0.86 | 0.862615 |
Target: 5'- uUUUAGUACAcGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUUAUGUaCUAGAAACGAAAGcAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 10817 | 0.87 | 0.815368 |
Target: 5'- -cUAGUACAcGAUgUUUGCUUUCGUCg -3' miRNA: 3'- aaAUUAUGUaCUAgAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 11036 | 0.88 | 0.794821 |
Target: 5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUUAUGuaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 10709 | 0.88 | 0.794821 |
Target: 5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUUAUGuaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 42065 | 0.91 | 0.658916 |
Target: 5'- aUUUAGUACucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUUAUGuaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 52784 | 0.92 | 0.599666 |
Target: 5'- --cGGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUUAUGUaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 105501 | 0.92 | 0.587866 |
Target: 5'- --cAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUUAUGUaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 105202 | 0.93 | 0.564405 |
Target: 5'- uUUUAAUACAcGAUCUUUGCUUUUGUCc -3' miRNA: 3'- -AAAUUAUGUaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 53042 | 0.94 | 0.507023 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- aaAUUAUGUACUAGAAACGAAAGcAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 42188 | 0.94 | 0.495833 |
Target: 5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- aaAUUAUGUACUAGAAACGAAAGcAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 119602 | 0.94 | 0.484756 |
Target: 5'- --cAGUACAcGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaUUAUGUaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 11171 | 0.94 | 0.484756 |
Target: 5'- --aAAUGCAcGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaUUAUGUaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 11764 | 0.96 | 0.431283 |
Target: 5'- -aUAAUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUUAUGUaCUAGAAACGAAAGCAG- -5' |
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8486 | 3' | -39.8 | NC_002169.1 | + | 11442 | 0.96 | 0.431283 |
Target: 5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUUAUGUaCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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