miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8487 3' -43.2 NC_002169.1 + 11232 1.14 0.025181
Target:  5'- cUCUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 71831 1.12 0.032149
Target:  5'- uUCUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 52859 1.12 0.032149
Target:  5'- uUCUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 10904 1.08 0.053832
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105289 1.07 0.062564
Target:  5'- cUCUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGCAg -5'
8487 3' -43.2 NC_002169.1 + 53123 1.02 0.109878
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 53040 1.01 0.134622
Target:  5'- uUCUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 53315 1 0.142584
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 104956 1 0.142584
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105400 0.98 0.194509
Target:  5'- cUUUAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 120037 0.96 0.242057
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 119418 0.96 0.242057
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11477 0.96 0.248639
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 10935 0.95 0.269272
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 119796 0.95 0.269273
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 104833 0.95 0.276451
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 10707 0.95 0.276451
Target:  5'- cUCUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 119616 0.95 0.276451
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 11012 0.95 0.276451
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 11034 0.95 0.276451
Target:  5'- cUCUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuaCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.