miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8487 3' -43.2 NC_002169.1 + 71637 0.79 0.924193
Target:  5'- --cAGUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- agaUCAUGUaCUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 119602 0.92 0.356681
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 42188 0.92 0.365549
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- agAUCAUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 104769 0.92 0.374569
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- agaucAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 52784 0.9 0.441769
Target:  5'- --cGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105501 0.9 0.441769
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105091 0.85 0.706627
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 11568 0.84 0.76112
Target:  5'- cUCUAGUACucGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGuaCUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 11173 0.82 0.831122
Target:  5'- ----aUGCAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11442 0.93 0.314638
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 10815 0.94 0.291265
Target:  5'- cUCUAGUACAcGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUaCUAgAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11034 0.95 0.276451
Target:  5'- cUCUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 53040 1.01 0.134622
Target:  5'- uUCUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 104956 1 0.142584
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 119418 0.96 0.242057
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 120037 0.96 0.242057
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 10935 0.95 0.269272
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 42255 0.95 0.276451
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 104833 0.95 0.276451
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 10707 0.95 0.276451
Target:  5'- cUCUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuaCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.