miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8487 3' -43.2 NC_002169.1 + 119418 0.96 0.242057
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 120037 0.96 0.242057
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 10935 0.95 0.269272
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 42255 0.95 0.276451
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 104833 0.95 0.276451
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 10707 0.95 0.276451
Target:  5'- cUCUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 104769 0.92 0.374569
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- agaucAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 42188 0.92 0.365549
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- agAUCAUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 119602 0.92 0.356681
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11442 0.93 0.314638
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 10815 0.94 0.291265
Target:  5'- cUCUAGUACAcGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUaCUAgAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11034 0.95 0.276451
Target:  5'- cUCUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 52978 0.76 0.976276
Target:  5'- uUUUAGUACAccAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUacUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 105145 0.76 0.978911
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- agaucaUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 105039 0.73 0.996291
Target:  5'- -aUAuUGCAUcagccuacucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUcAUGUA----------CUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 104956 0.73 0.99785
Target:  5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAuGUacUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105600 0.72 0.999044
Target:  5'- ----aUACAcaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGUacUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 42453 0.7 0.999898
Target:  5'- --aAGUcaaACAcaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCA---UGUacUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 42376 0.68 0.999992
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucaUGUacUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11232 1.14 0.025181
Target:  5'- cUCUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.