Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8487 | 3' | -43.2 | NC_002169.1 | + | 42065 | 0.89 | 0.493722 |
Target: 5'- aUUUAGUACucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGuaCUAGAAACGAAAGCAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 42188 | 0.92 | 0.365549 |
Target: 5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- agAUCAUGUACUAGAAACGAAAGcAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 42192 | 0.93 | 0.314638 |
Target: 5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agAUCAUGUaCUAGAAACGAAAGCAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 42255 | 0.95 | 0.276451 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 42376 | 0.68 | 0.999992 |
Target: 5'- -----cACA--AUCUUUGCUUUCGUCc -3' miRNA: 3'- agaucaUGUacUAGAAACGAAAGCAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 42453 | 0.7 | 0.999898 |
Target: 5'- --aAGUcaaACAcaAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaUCA---UGUacUAGAAACGAAAGCAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 52662 | 0.75 | 0.987325 |
Target: 5'- uUUUAGUACAcGAUgUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGUaCUAgAAACGAAAGcAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 52784 | 0.9 | 0.441769 |
Target: 5'- --cGGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUaCUAGAAACGAAAGCAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 52859 | 1.12 | 0.032149 |
Target: 5'- uUCUAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGUACUAGAAACGAAAGCAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 52898 | 0.78 | 0.946062 |
Target: 5'- uUUUAGUACAUcAUCUUUGCUUUCaUCc -3' miRNA: 3'- -AGAUCAUGUAcUAGAAACGAAAGcAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 52978 | 0.76 | 0.976276 |
Target: 5'- uUUUAGUACAccAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGUacUAGAAACGAAAGcAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 53040 | 1.01 | 0.134622 |
Target: 5'- uUCUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 53123 | 1.02 | 0.109878 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- agaUCAUGUACUAGAAACGAAAGCAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 53233 | 0.9 | 0.462191 |
Target: 5'- ----aUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaucAUGUACUAGAAACGAAAGCAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 53315 | 1 | 0.142584 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUACUAGAAACGAAAGCAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 71637 | 0.79 | 0.924193 |
Target: 5'- --cAGUACAcGAUCUUUGCUUUCaUCg -3' miRNA: 3'- agaUCAUGUaCUAGAAACGAAAGcAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 71831 | 1.12 | 0.032149 |
Target: 5'- uUCUAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGUACUAGAAACGAAAGCAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 104769 | 0.92 | 0.374569 |
Target: 5'- ----aUACAUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- agaucAUGUACUAGAAACGAAAGCAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 104833 | 0.95 | 0.276451 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5' |
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8487 | 3' | -43.2 | NC_002169.1 | + | 104956 | 1 | 0.142584 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUACUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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