miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8487 3' -43.2 NC_002169.1 + 10326 0.69 0.99997
Target:  5'- ---cGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- agauCAUGUACU--------AGAAACGaaAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 10707 0.95 0.276451
Target:  5'- cUCUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 10815 0.94 0.291265
Target:  5'- cUCUAGUACAcGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUaCUAgAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 10904 1.08 0.053832
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 10935 0.95 0.269272
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11012 0.95 0.276451
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 11034 0.95 0.276451
Target:  5'- cUCUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11132 0.94 0.298902
Target:  5'- gUUUAaUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUcAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11173 0.82 0.831122
Target:  5'- ----aUGCAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11232 1.14 0.025181
Target:  5'- cUCUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11366 0.92 0.374569
Target:  5'- uUUUAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUcAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11442 0.93 0.314638
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11477 0.96 0.248639
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11568 0.84 0.76112
Target:  5'- cUCUAGUACucGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGuaCUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 11638 0.91 0.402517
Target:  5'- uUCUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUACUAgAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 11761 0.8 0.904687
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 32793 0.69 0.999958
Target:  5'- aCUAGUACGcUGAccgaUUUGCgucgUUUCGUCg -3'
miRNA:   3'- aGAUCAUGU-ACUag--AAACG----AAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 41772 0.73 0.997406
Target:  5'- ----aUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGuaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 41873 0.69 0.99997
Target:  5'- ----aUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- agaucAUGUaCUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 41999 0.78 0.950797
Target:  5'- --cAGUACAcGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- agaUCAUGUaCUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.