miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8487 3' -43.2 NC_002169.1 + 120230 0.82 0.831122
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 120037 0.96 0.242057
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 119796 0.95 0.269273
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 119616 0.95 0.276451
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 119602 0.92 0.356681
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 119518 0.81 0.874645
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 119418 0.96 0.242057
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 119325 0.73 0.996291
Target:  5'- -aUAG-AC--GAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCaUGuaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105690 0.67 0.999996
Target:  5'- ----aUACAcGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- agaucAUGUaCUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 105600 0.72 0.999044
Target:  5'- ----aUACAcaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGUacUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105501 0.9 0.441769
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105407 0.68 0.999978
Target:  5'- cUUUAaUACAcGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AGAUcAUGUaCUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 105400 0.98 0.194509
Target:  5'- cUUUAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105322 0.71 0.999702
Target:  5'- --aAGUACAcaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUacUAgAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105289 1.07 0.062564
Target:  5'- cUCUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGCAg -5'
8487 3' -43.2 NC_002169.1 + 105202 0.77 0.966932
Target:  5'- uUUUAaUACAcGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AGAUcAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105145 0.76 0.978911
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- agaucaUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 105091 0.85 0.706627
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 105039 0.73 0.996291
Target:  5'- -aUAuUGCAUcagccuacucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUcAUGUA----------CUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 104956 1 0.142584
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUACUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.