miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8487 3' -43.2 NC_002169.1 + 105690 0.67 0.999996
Target:  5'- ----aUACAcGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- agaucAUGUaCUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 11012 0.95 0.276451
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 119796 0.95 0.269273
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11232 1.14 0.025181
Target:  5'- cUCUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 104956 0.73 0.99785
Target:  5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAuGUacUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105039 0.73 0.996291
Target:  5'- -aUAuUGCAUcagccuacucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUcAUGUA----------CUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 52978 0.76 0.976276
Target:  5'- uUUUAGUACAccAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUacUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 11761 0.8 0.904687
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 42065 0.89 0.493722
Target:  5'- aUUUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11132 0.94 0.298902
Target:  5'- gUUUAaUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUcAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11638 0.91 0.402517
Target:  5'- uUCUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUACUAgAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 120230 0.82 0.831122
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 42376 0.68 0.999992
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucaUGUacUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 11366 0.92 0.374569
Target:  5'- uUUUAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUcAUGUACUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 42453 0.7 0.999898
Target:  5'- --aAGUcaaACAcaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCA---UGUacUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 119518 0.81 0.874645
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- -AGAUCAUGUaCUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 42192 0.93 0.314638
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 119616 0.95 0.276451
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 105600 0.72 0.999044
Target:  5'- ----aUACAcaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGUacUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105145 0.76 0.978911
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- agaucaUGUACUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.