miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8487 5' -46.8 NC_002169.1 + 11198 1.08 0.019789
Target:  5'- uUGGACGAAAGCAAAGAUCGAGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCUCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 119582 1 0.061088
Target:  5'- uUGGACGAAAGCAAAGAUCGuGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 120201 1 0.061088
Target:  5'- uUGGACGAAAGCAAAGAUCGuGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 42030 1 0.064769
Target:  5'- uUGGACGAAAGCAAAGAUCGuGUACUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11604 1 0.064769
Target:  5'- gUGGACGAAAGCAAAGAUCGuGUACUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 41930 1 0.064769
Target:  5'- uUGGACGAAAGCAAAGAUCGAGUAUg- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCUCAUGau -5'
8487 5' -46.8 NC_002169.1 + 104867 1 0.066689
Target:  5'- uUGGACGAAAGCAAAGAUCGAGUagGCUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCUCA--UGAU- -5'
8487 5' -46.8 NC_002169.1 + 105662 0.99 0.070694
Target:  5'- uUGGACGAAAGCAAAGAUCGuGUACUGu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 10870 0.98 0.079409
Target:  5'- uUGGACG-AAGCAAAGAUCGAGUACUAg -3'
miRNA:   3'- -ACCUGCuUUCGUUUCUAGCUCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11602 0.95 0.125582
Target:  5'- gUGGACGAAAGCAAAGAUCGuGUAUUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11730 0.95 0.125582
Target:  5'- -cGAUGAAAGCAAAGAUCGAGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCUCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 52944 0.94 0.152799
Target:  5'- uUGGACGAAAGCAAAGAUCGuGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGau -5'
8487 5' -46.8 NC_002169.1 + 119633 0.94 0.152799
Target:  5'- uUGGACGAAAGCAAAGAUCGuGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGau -5'
8487 5' -46.8 NC_002169.1 + 11098 0.94 0.152799
Target:  5'- uUGGACGAAAGCAAAGAUCGuGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGau -5'
8487 5' -46.8 NC_002169.1 + 41902 0.93 0.170662
Target:  5'- uUGGACGAAAGCAAA-AUCGAGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGCUCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 105571 0.92 0.195599
Target:  5'- uUGGAUGAAAGCAAAGAUCGuGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 105238 0.91 0.217788
Target:  5'- -cGACGAAAGCAAAGAUCGuGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11317 0.9 0.22967
Target:  5'- -cGACGAAAGCAAAGAUCGuGUACUAu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 119760 0.9 0.235813
Target:  5'- -cGACGAAAGCAAAGAUCGuGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 52696 0.89 0.255074
Target:  5'- uUGGACGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcuCAUGAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.