miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8487 5' -46.8 NC_002169.1 + 10551 0.69 0.995302
Target:  5'- -aGAUGAAAGCAAAcAUUGuGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 10677 0.71 0.985142
Target:  5'- -cGAUGAAAGCAAAGAUCGuuGUGg-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCu-CAUgau -5'
8487 5' -46.8 NC_002169.1 + 10743 0.8 0.682567
Target:  5'- -cGACGAAAGCAAAGAUCauGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 10851 0.76 0.861531
Target:  5'- -cGAUGAAAGCAAAGAUCauGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 10870 0.98 0.079409
Target:  5'- uUGGACG-AAGCAAAGAUCGAGUACUAg -3'
miRNA:   3'- -ACCUGCuUUCGUUUCUAGCUCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 10976 0.77 0.798121
Target:  5'- -cGACGAAAGCAAAcAUCGuGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11070 0.8 0.682567
Target:  5'- -cGACGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11098 0.94 0.152799
Target:  5'- uUGGACGAAAGCAAAGAUCGuGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGau -5'
8487 5' -46.8 NC_002169.1 + 11198 1.08 0.019789
Target:  5'- uUGGACGAAAGCAAAGAUCGAGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCUCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11202 0.85 0.445752
Target:  5'- uUGGACGAAAGCAAAGAUCauGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11317 0.9 0.22967
Target:  5'- -cGACGAAAGCAAAGAUCGuGUACUAu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11330 0.74 0.936514
Target:  5'- -cGACGAAAGCAAAGAUCG--UGCa- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCucAUGau -5'
8487 5' -46.8 NC_002169.1 + 11443 0.77 0.798121
Target:  5'- -cGAUGAAAGCAAAGAUUGuGUAUUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11602 0.95 0.125582
Target:  5'- gUGGACGAAAGCAAAGAUCGuGUAUUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11604 1 0.064769
Target:  5'- gUGGACGAAAGCAAAGAUCGuGUACUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11730 0.95 0.125582
Target:  5'- -cGAUGAAAGCAAAGAUCGAGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCUCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 25796 0.69 0.996636
Target:  5'- -aGGCGAGccGGCAugcGGGAUCGGGUAUUu -3'
miRNA:   3'- acCUGCUU--UCGU---UUCUAGCUCAUGAu -5'
8487 5' -46.8 NC_002169.1 + 29549 0.71 0.980981
Target:  5'- gUGGACGAGAaCGAGGA-CGAGUguaaaACUAa -3'
miRNA:   3'- -ACCUGCUUUcGUUUCUaGCUCA-----UGAU- -5'
8487 5' -46.8 NC_002169.1 + 35145 0.68 0.997176
Target:  5'- -cGACGAcuaGGGUGAGGAUCGAGcGCg- -3'
miRNA:   3'- acCUGCU---UUCGUUUCUAGCUCaUGau -5'
8487 5' -46.8 NC_002169.1 + 35999 0.66 0.999549
Target:  5'- cGGGCGAAugcgaaugcGGCGAuuuuGAagugacUCGAGUGCg- -3'
miRNA:   3'- aCCUGCUU---------UCGUUu---CU------AGCUCAUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.