Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8487 | 5' | -46.8 | NC_002169.1 | + | 134387 | 0.67 | 0.999121 |
Target: 5'- cUGGGCGGcGGGCuGGGAUUGAGcGCg- -3' miRNA: 3'- -ACCUGCU-UUCGuUUCUAGCUCaUGau -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 120201 | 1 | 0.061088 |
Target: 5'- uUGGACGAAAGCAAAGAUCGuGUACUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 120073 | 0.85 | 0.41666 |
Target: 5'- -cGACGAAAGCAAAGAUCGuGUAUUAc -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 119760 | 0.9 | 0.235813 |
Target: 5'- -cGACGAAAGCAAAGAUCGuGUACUGa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 119633 | 0.94 | 0.152799 |
Target: 5'- uUGGACGAAAGCAAAGAUCGuGUACc- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCuCAUGau -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 119582 | 1 | 0.061088 |
Target: 5'- uUGGACGAAAGCAAAGAUCGuGUACUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 119484 | 0.84 | 0.486233 |
Target: 5'- uUGGACGAAAGCAAAGAUCGucUAUg- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCucAUGau -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 119454 | 0.76 | 0.861531 |
Target: 5'- -cGAUGAAAGCAAAGAUCauGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 119356 | 0.75 | 0.8926 |
Target: 5'- -cGAUaAAAGCAAAGAUCGuGUACUAa -3' miRNA: 3'- acCUGcUUUCGUUUCUAGCuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 105662 | 0.99 | 0.070694 |
Target: 5'- uUGGACGAAAGCAAAGAUCGuGUACUGu -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 105571 | 0.92 | 0.195599 |
Target: 5'- uUGGAUGAAAGCAAAGAUCGuGUAUUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 105534 | 0.81 | 0.60492 |
Target: 5'- -cGAUGAAAGCAAAGAUCGuGUAUUAc -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 105483 | 0.79 | 0.736761 |
Target: 5'- uUGGACGAAAGCAAAcAUUGuGUACUu -3' miRNA: 3'- -ACCUGCUUUCGUUUcUAGCuCAUGAu -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 105443 | 0.78 | 0.78827 |
Target: 5'- -cGACGAAAGCAAAGAUUGuGUAUg- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCuCAUGau -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 105366 | 0.83 | 0.528377 |
Target: 5'- uUGGACaAAAGCAAAGAUCGuGUAUUAa -3' miRNA: 3'- -ACCUGcUUUCGUUUCUAGCuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 105253 | 0.87 | 0.345063 |
Target: 5'- -cGAUGAAAGCAAAGAUCGuGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 105238 | 0.91 | 0.217788 |
Target: 5'- -cGACGAAAGCAAAGAUCGuGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 105128 | 0.73 | 0.951131 |
Target: 5'- --uACGAAAGCAAAGAUCauGUACUAg -3' miRNA: 3'- accUGCUUUCGUUUCUAGcuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 105117 | 0.89 | 0.275606 |
Target: 5'- uUGGACGAAAGCAAAGAUCauGUACUGa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGcuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 104995 | 0.76 | 0.861531 |
Target: 5'- -cGAUGAAAGCAAAGAUCauGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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