miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8487 5' -46.8 NC_002169.1 + 52817 0.79 0.736761
Target:  5'- -cGAUGAAAGCAAAGAUgGuGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAgCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 53074 0.84 0.475944
Target:  5'- uUGGACGAAAGCAAAGAUCauGUAUUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 104797 0.83 0.53913
Target:  5'- uUGGACGAAAGCAAAGAUUGAcUAUg- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCUcAUGau -5'
8487 5' -46.8 NC_002169.1 + 42289 0.82 0.549956
Target:  5'- uUGGACGAAAGCAAAGAUUGuGUuugACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCA---UGAu -5'
8487 5' -46.8 NC_002169.1 + 52934 0.82 0.5718
Target:  5'- -cGAUGAAAGCAAAGAUUGAGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCUCAUGau -5'
8487 5' -46.8 NC_002169.1 + 105534 0.81 0.60492
Target:  5'- -cGAUGAAAGCAAAGAUCGuGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 42220 0.8 0.671534
Target:  5'- uUGGACGAAAGCAAAGAUUGuGUu--- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAugau -5'
8487 5' -46.8 NC_002169.1 + 10743 0.8 0.682567
Target:  5'- -cGACGAAAGCAAAGAUCauGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11070 0.8 0.682567
Target:  5'- -cGACGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11202 0.85 0.445752
Target:  5'- uUGGACGAAAGCAAAGAUCauGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 120073 0.85 0.41666
Target:  5'- -cGACGAAAGCAAAGAUCGuGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 53154 0.89 0.275606
Target:  5'- uUGGACGAAAGCAAAGAUCauGUACUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 104867 1 0.066689
Target:  5'- uUGGACGAAAGCAAAGAUCGAGUagGCUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCUCA--UGAU- -5'
8487 5' -46.8 NC_002169.1 + 11602 0.95 0.125582
Target:  5'- gUGGACGAAAGCAAAGAUCGuGUAUUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 119633 0.94 0.152799
Target:  5'- uUGGACGAAAGCAAAGAUCGuGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGau -5'
8487 5' -46.8 NC_002169.1 + 41902 0.93 0.170662
Target:  5'- uUGGACGAAAGCAAA-AUCGAGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGCUCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 105238 0.91 0.217788
Target:  5'- -cGACGAAAGCAAAGAUCGuGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11317 0.9 0.22967
Target:  5'- -cGACGAAAGCAAAGAUCGuGUACUAu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 52696 0.89 0.255074
Target:  5'- uUGGACGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 71668 0.89 0.255074
Target:  5'- uUGGACGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcuCAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.