miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8487 5' -46.8 NC_002169.1 + 64769 0.66 0.999783
Target:  5'- uUGGGCGAcuuGGGCAucGGUCGuuuGU-CUGa -3'
miRNA:   3'- -ACCUGCU---UUCGUuuCUAGCu--CAuGAU- -5'
8487 5' -46.8 NC_002169.1 + 105483 0.79 0.736761
Target:  5'- uUGGACGAAAGCAAAcAUUGuGUACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGCuCAUGAu -5'
8487 5' -46.8 NC_002169.1 + 53062 0.83 0.53913
Target:  5'- uUGGAUGAAAGCAAAGAU-GAuGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAgCU-CAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11198 1.08 0.019789
Target:  5'- uUGGACGAAAGCAAAGAUCGAGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCUCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 100213 0.69 0.993566
Target:  5'- cGGACGAcAAGCGAgcugaucuGGAUCGAGa---- -3'
miRNA:   3'- aCCUGCU-UUCGUU--------UCUAGCUCaugau -5'
8487 5' -46.8 NC_002169.1 + 37286 0.7 0.990036
Target:  5'- cGGAuCGAcgGAGCAGGGAUCGAugACg- -3'
miRNA:   3'- aCCU-GCU--UUCGUUUCUAGCUcaUGau -5'
8487 5' -46.8 NC_002169.1 + 11330 0.74 0.936514
Target:  5'- -cGACGAAAGCAAAGAUCG--UGCa- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCucAUGau -5'
8487 5' -46.8 NC_002169.1 + 52823 0.74 0.936514
Target:  5'- -cGAUGAAAGCAAAcAUCGuGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 42417 0.76 0.861531
Target:  5'- -cGAUGAAAGCAAAGAUCauGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 42029 0.78 0.75777
Target:  5'- -cGAUGAAAGCAAAGAUCGuGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGau -5'
8487 5' -46.8 NC_002169.1 + 104995 0.76 0.861531
Target:  5'- -cGAUGAAAGCAAAGAUCauGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 42348 0.75 0.885223
Target:  5'- -cGAUGAAAGCAAAGAUCauGUACUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 134387 0.67 0.999121
Target:  5'- cUGGGCGGcGGGCuGGGAUUGAGcGCg- -3'
miRNA:   3'- -ACCUGCU-UUCGuUUCUAGCUCaUGau -5'
8487 5' -46.8 NC_002169.1 + 11443 0.77 0.798121
Target:  5'- -cGAUGAAAGCAAAGAUUGuGUAUUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 25796 0.69 0.996636
Target:  5'- -aGGCGAGccGGCAugcGGGAUCGGGUAUUu -3'
miRNA:   3'- acCUGCUU--UCGU---UUCUAGCUCAUGAu -5'
8487 5' -46.8 NC_002169.1 + 104925 0.74 0.919374
Target:  5'- -cGACGAAAGCAAAGAUCauGUAUUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 10976 0.77 0.798121
Target:  5'- -cGACGAAAGCAAAcAUCGuGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 53282 0.79 0.715323
Target:  5'- -cGACGAAAGCAAAGAUCauGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 84422 0.69 0.994489
Target:  5'- aGGAUGcGAGUucAGGAUCGAauGUACUAc -3'
miRNA:   3'- aCCUGCuUUCGu-UUCUAGCU--CAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 10677 0.71 0.985142
Target:  5'- -cGAUGAAAGCAAAGAUCGuuGUGg-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCu-CAUgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.