miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8488 5' -40.3 NC_002169.1 + 11445 1.1 0.076505
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAACACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 105532 1 0.276783
Target:  5'- uUCGAUGAAAGCAAAGAUcGUGUAUUAc -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAaCACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 42031 0.95 0.43758
Target:  5'- cUCGAUGAAAGCAAAGAUcGUGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAaCACAUAau -5'
8488 5' -40.3 NC_002169.1 + 105441 0.95 0.447977
Target:  5'- uUCGAcGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAACACAUAau -5'
8488 5' -40.3 NC_002169.1 + 52932 0.93 0.546982
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAACaCAUAau -5'
8488 5' -40.3 NC_002169.1 + 105569 0.92 0.570015
Target:  5'- -gGAUGAAAGCAAAGAUcGUGUAUUAa -3'
miRNA:   3'- agCUACUUUCGUUUCUAaCACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 105255 0.92 0.570015
Target:  5'- uUCGAUGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 71797 0.92 0.581622
Target:  5'- cUCGAUGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 52815 0.92 0.581622
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 120071 0.89 0.721379
Target:  5'- uUCGAcGAAAGCAAAGAUcGUGUAUUAc -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAaCACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 10679 0.86 0.846506
Target:  5'- gUCGAUGAAAGCAAAGAUcguUGUGg---- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUA---ACACauaau -5'
8488 5' -40.3 NC_002169.1 + 104987 0.85 0.889005
Target:  5'- uUCGAUGAAAGCAAAGAUcaUGUGc---- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUA--ACACauaau -5'
8488 5' -40.3 NC_002169.1 + 42158 0.84 0.896641
Target:  5'- -aGAUGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUACUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 42350 0.82 0.955958
Target:  5'- cUCGAUGAAAGCAAAGAUcaUGUacuacaauuuuaGUAUUGu -3'
miRNA:   3'- -AGCUACUUUCGUUUCUA--ACA------------CAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 105236 0.81 0.964149
Target:  5'- gUCGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 119762 0.81 0.964149
Target:  5'- uUCGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11315 0.81 0.964149
Target:  5'- uUCGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 104997 0.81 0.97121
Target:  5'- uUCGAUGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 42419 0.81 0.97121
Target:  5'- gUCGAUGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 10849 0.81 0.97121
Target:  5'- gUCGAUGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAacACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.