miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8488 5' -40.3 NC_002169.1 + 10551 0.79 0.988152
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- agCUACUUUCGUUUcUAACACAUaau -5'
8488 5' -40.3 NC_002169.1 + 10679 0.86 0.846506
Target:  5'- gUCGAUGAAAGCAAAGAUcguUGUGg---- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUA---ACACauaau -5'
8488 5' -40.3 NC_002169.1 + 10741 0.7 0.999999
Target:  5'- uUCGAcGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 10849 0.81 0.97121
Target:  5'- gUCGAUGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 10978 0.66 1
Target:  5'- cUCGAcGAAAGCAAAcAUcGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUcUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11068 0.7 0.999999
Target:  5'- uUCGAcGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11096 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11204 0.7 0.999999
Target:  5'- -gGAcGAAAGCAAAGAUcaUGUAUUAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAacACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 11315 0.81 0.964149
Target:  5'- uUCGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11332 0.74 0.99987
Target:  5'- gUCGAcGAAAGCAAAGAUcGUGcAUUu -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAaCACaUAAu -5'
8488 5' -40.3 NC_002169.1 + 11445 1.1 0.076505
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAACACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 11474 0.66 1
Target:  5'- gUCGAUGAAAGCAAAcaucaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUcuaacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11602 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11604 0.81 0.97121
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAUUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 11664 0.67 1
Target:  5'- aUCGAUGAcuGCAucGAUaGUGUc--- -3'
miRNA:   3'- -AGCUACUuuCGUuuCUAaCACAuaau -5'
8488 5' -40.3 NC_002169.1 + 11732 0.8 0.976936
Target:  5'- gUCGAUGAAAGCAAAGAUcGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAaC-------------ACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 42031 0.95 0.43758
Target:  5'- cUCGAUGAAAGCAAAGAUcGUGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAaCACAUAau -5'
8488 5' -40.3 NC_002169.1 + 42032 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 42158 0.84 0.896641
Target:  5'- -aGAUGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUACUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 42222 0.79 0.989739
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAACACAuaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.