miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8488 5' -40.3 NC_002169.1 + 10741 0.7 0.999999
Target:  5'- uUCGAcGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 42222 0.79 0.989739
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAACACAuaau -5'
8488 5' -40.3 NC_002169.1 + 42291 0.79 0.989739
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAACACAuaau -5'
8488 5' -40.3 NC_002169.1 + 119354 0.77 0.997764
Target:  5'- uUCGAUaAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- -AGCUAcUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 42032 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 119635 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 48879 0.72 0.99999
Target:  5'- -aGAUGAGGGa--GGAUUGUGUGUc- -3'
miRNA:   3'- agCUACUUUCguuUCUAACACAUAau -5'
8488 5' -40.3 NC_002169.1 + 129761 0.71 0.999995
Target:  5'- gUUGGUGAcGAGCGGAuggacgcGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUACU-UUCGUUU-------CUAACACAUAau -5'
8488 5' -40.3 NC_002169.1 + 11204 0.7 0.999999
Target:  5'- -gGAcGAAAGCAAAGAUcaUGUAUUAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAacACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 10551 0.79 0.988152
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- agCUACUUUCGUUUcUAACACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11604 0.81 0.97121
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAUUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 119452 0.81 0.97121
Target:  5'- uUCGAUGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 105441 0.95 0.447977
Target:  5'- uUCGAcGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAACACAUAau -5'
8488 5' -40.3 NC_002169.1 + 52932 0.93 0.546982
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAACaCAUAau -5'
8488 5' -40.3 NC_002169.1 + 52815 0.92 0.581622
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 120071 0.89 0.721379
Target:  5'- uUCGAcGAAAGCAAAGAUcGUGUAUUAc -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAaCACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 104987 0.85 0.889005
Target:  5'- uUCGAUGAAAGCAAAGAUcaUGUGc---- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUA--ACACauaau -5'
8488 5' -40.3 NC_002169.1 + 11315 0.81 0.964149
Target:  5'- uUCGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 105236 0.81 0.964149
Target:  5'- gUCGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 10849 0.81 0.97121
Target:  5'- gUCGAUGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAacACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.