miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8488 5' -40.3 NC_002169.1 + 10978 0.66 1
Target:  5'- cUCGAcGAAAGCAAAcAUcGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUcUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 104927 0.78 0.995353
Target:  5'- gUCGAcGAAAGCAAAGAUcaUGUAUUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAacACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 42419 0.81 0.97121
Target:  5'- gUCGAUGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11445 1.1 0.076505
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAACACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 47518 0.68 1
Target:  5'- aUCaAUGAAAGCGAuc--UGUGUGUUAu -3'
miRNA:   3'- -AGcUACUUUCGUUucuaACACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 83426 0.69 1
Target:  5'- aUCGAUGAAAGgGA----UGUGUAUUu -3'
miRNA:   3'- -AGCUACUUUCgUUucuaACACAUAAu -5'
8488 5' -40.3 NC_002169.1 + 11096 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11602 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 119580 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 52825 0.77 0.997764
Target:  5'- uUCGAUGAAAGCAAAcAUcGUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11332 0.74 0.99987
Target:  5'- gUCGAcGAAAGCAAAGAUcGUGcAUUu -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAaCACaUAAu -5'
8488 5' -40.3 NC_002169.1 + 105660 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11664 0.67 1
Target:  5'- aUCGAUGAcuGCAucGAUaGUGUc--- -3'
miRNA:   3'- -AGCUACUuuCGUuuCUAaCACAuaau -5'
8488 5' -40.3 NC_002169.1 + 105376 0.75 0.999383
Target:  5'- gUCGAcGAucuuggacaaAAGCAAAGAUcGUGUAUUAa -3'
miRNA:   3'- -AGCUaCU----------UUCGUUUCUAaCACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 98692 0.67 1
Target:  5'- gUCGAUccGAAGCGGGGucucAUUGUGUAUUu -3'
miRNA:   3'- -AGCUAc-UUUCGUUUC----UAACACAUAAu -5'
8488 5' -40.3 NC_002169.1 + 52942 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 53060 0.76 0.998504
Target:  5'- -gGAUGAAAGCAAAGAUgaUGUAc-- -3'
miRNA:   3'- agCUACUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11732 0.8 0.976936
Target:  5'- gUCGAUGAAAGCAAAGAUcGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAaC-------------ACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 105481 0.68 1
Target:  5'- -gGAcGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUcUAACACAUaau -5'
8488 5' -40.3 NC_002169.1 + 53284 0.7 0.999999
Target:  5'- gUCGAcGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAacACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.