miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8489 3' -41.6 NC_002169.1 + 11173 0.66 1
Target:  5'- ----aUGCAcGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 111087 0.68 1
Target:  5'- -gUAGUACAUGuUGUgcaagUGUUUugUCGUCu -3'
miRNA:   3'- agAUCAUGUACuACAa----ACGAA--AGUAG- -5'
8489 3' -41.6 NC_002169.1 + 41873 0.67 1
Target:  5'- ----aUACAcGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- agaucAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 105407 0.67 1
Target:  5'- cUUUAaUACAcGAUcUUUGCUUUCAUCc -3'
miRNA:   3'- -AGAUcAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 120230 0.66 1
Target:  5'- ----aUACAcGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 42065 0.73 0.999388
Target:  5'- aUUUAGUACucGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 53233 0.74 0.998808
Target:  5'- ----aUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 105145 0.75 0.998201
Target:  5'- -----cACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- agaucaUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 105501 0.75 0.998201
Target:  5'- --cAGUACAcGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 52784 0.75 0.998201
Target:  5'- --cGGUACAcGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 52978 0.75 0.997811
Target:  5'- uUUUAGUACAccAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGUacUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 11366 0.76 0.99371
Target:  5'- uUUUAaUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUcAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 104769 0.76 0.99371
Target:  5'- ----aUACAUGAUcUUUGCUUUCGUCa -3'
miRNA:   3'- agaucAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 41999 0.76 0.992638
Target:  5'- --cAGUACAcGAUcUUUGCUUUCAUCu -3'
miRNA:   3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 52898 0.77 0.991426
Target:  5'- uUUUAGUACAUcAUcUUUGCUUUCAUCc -3'
miRNA:   3'- -AGAUCAUGUAcUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 119602 0.77 0.991426
Target:  5'- --cAGUACAcGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 71637 0.78 0.984931
Target:  5'- --cAGUACAcGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 42192 0.78 0.982836
Target:  5'- -aUAGUACAcGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 11442 0.78 0.982836
Target:  5'- -aUAGUACAcGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 119518 0.78 0.980528
Target:  5'- uUUUAGUACAcGAUcUUUGCUUUUAUCg -3'
miRNA:   3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.